Use criterion and otherwise cleanup/simplify benchmarking

onecodex · Sep 5, 2019 · 7b35ce8 · 7b35ce8
1 parent 5bb2360
commit 7b35ce8
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Showing 11 changed files with 282 additions and 324 deletions.
diff --git a/Cargo.toml b/Cargo.toml
@@ -18,10 +18,12 @@ compression = ["bzip2", "flate2", "xz2"]
 flate2 = { version="1.0.6", optional=true }
 bzip2 = { version="0.3.3", optional=true }
 xz2 = { version="0.1.6", optional=true }
-memchr = "2.2.0"
+memchr = "2.2.1"
 
 [dev-dependencies]
-bencher = "0.1.5"
+criterion = "0.3"
+bio = "0.28"
+seq_io = "0.3"
 
 [[bench]]
 name = "benchmark"

diff --git a/bench/benchmark.c b/bench/benchmark.c
diff --git a/bench/benchmark.py b/bench/benchmark.py
diff --git a/bench/benchmark.rs b/bench/benchmark.rs
diff --git a/bench/benchmark_biopython.py b/bench/benchmark_biopython.py