Create labels from map annotations

[will-moore]

See https://trello.com/c/TT47EiZH/185-labels-from-map-annotations

And requested again at the BioImage Analysis Satellite Symposium
at Light Microscopy Australia 2019, Brisbane.

Demo at https://twitter.com/will_j_moore/status/1105389170065899522

To test:

• Select some image panels in Figure that have some Map Annotations (Key-Value pairs)
• In the "Add Labels" form, choose Key-Value Pairs in the drop-down menu
• Dialog should load all map annotations on the images and allow you to choose the Key. Numbers for each should indicate how many of the selected images have that Key (see screenshot)
• The Example Label at the bottom should give you an idea of what the label will look like Key: Value.
• The Include Key in Label checkbox and choosing a new Key from the list should update the example label
• Clicking OK should create labels on the selected images (If each image has that key).
• NB: If an image has multiple Key: Value pairs for a chosen key, then multiple labels will be created for that image.

[jburel]

This feature was also mentioned during last week training in Singapore

[pwalczysko]

All works as described. Ready to merge FMPOV

[joshmoore]

Is there an idea of a target version for this?

[jburel]

We have not focussed much effort on figure recently.
This feature could be included in a point release

[evenhuis]

Hi Will,

that looks awesome.

What would be great is to have the option to add the key as group-level label over the set of value labels.

Tools for adding group-level labels or arbitrary labels on figure would be great.

Maybe easy to understand in pictures:

Cheers,

Chris

[will-moore]

@evenhuis Thanks for the feedback. This is another use-case for "standalone labels" (labels not on panels) https://trello.com/c/wtu7IVuN/10-stand-alone-labels.

If you want to test this PR locally, you need to clone the repo, and put the omero-figure directory on your PYTHONPATH.

cd path/to/figure
git clone git@github.com:ome/omero-figure.git
export PYTHONPATH=/path/to/figure/omero-figure:$PYTHONPATH

You'll need to pip uninstall the figure you've already got there (if you haven't got figure on that server, you'll need to at least do the $ bin/omero config append omero.web.apps '"omero_figure"' step.

Then checkout my branch and you'll need npm install and grunt build as described at
https://github.com/ome/omero-figure#development
That should create the JavaScript files you need. Let us know if that works...

[jburel]

Thanks

[will-moore]

@evenhuis This just got released. Sorry it took so long. https://www.openmicroscopy.org/2019/10/28/figure-4-1-0.html

[evenhuis]

Hi Will, Great work. It will be a greatly appreciated functionality. Cheers, Chris

…

On 28 Oct 2019, at 11:14 pm, Will Moore ***@***.***> wrote:  @evenhuis This just got released. Sorry it took so long. https://www.openmicroscopy.org/2019/10/28/figure-4-1-0.html — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub, or unsubscribe.