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NTR-PVALB-GABAergic-neurons-of-the-substantia-nigra #2832

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@AvolaAmg AvolaAmg commented Dec 3, 2024

Fixes #2761
Fixes #2833
Fixes #2834
Fixes #2835

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AvolaAmg commented Dec 4, 2024

#gogoeditdiff

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github-actions bot commented Dec 4, 2024

Here's a diff of how these changes impact the classified ontology (on -base file):

Ontology comparison

Left

  • Ontology IRI: http://purl.obolibrary.org/obo/cl/cl-base.owl
  • Version IRI: http://purl.obolibrary.org/obo/cl/releases/2024-12-04/cl-base.owl
  • Loaded from: file:/__w/cell-ontology/cell-ontology/src/ontology/cl-base-master.owl/cl-base.owl

Right

  • Ontology IRI: http://purl.obolibrary.org/obo/cl/cl-base.owl
  • Version IRI: http://purl.obolibrary.org/obo/cl/releases/2024-12-04/cl-base.owl
  • Loaded from: file:/__w/cell-ontology/cell-ontology/src/ontology/cl-base-pr.owl/cl-base.owl

Ontology imports

Ontology annotations

CCL3-positive alveolar macrophage http://purl.obolibrary.org/obo/CL_4033041

Added

CD38-negative naive B cell http://purl.obolibrary.org/obo/CL_0002102

Added

CLM_1000001 http://purl.obolibrary.org/obo/CLM_1000001

Added

CLM_1000002 http://purl.obolibrary.org/obo/CLM_1000002

Added

CLM_1000003 http://purl.obolibrary.org/obo/CLM_1000003

Added

CLM_1000004 http://purl.obolibrary.org/obo/CLM_1000004

Added

CLM_1000005 http://purl.obolibrary.org/obo/CLM_1000005

Added

CLM_1000006 http://purl.obolibrary.org/obo/CLM_1000006

Added

CLM_1000008 http://purl.obolibrary.org/obo/CLM_1000008

Added

CLM_1000009 http://purl.obolibrary.org/obo/CLM_1000009

Added

CLM_1000010 http://purl.obolibrary.org/obo/CLM_1000010

Added

CLM_1000026 http://purl.obolibrary.org/obo/CLM_1000026

Added

CLM_1000027 http://purl.obolibrary.org/obo/CLM_1000027

Added

CLM_1000031 http://purl.obolibrary.org/obo/CLM_1000031

Added

CLM_1000032 http://purl.obolibrary.org/obo/CLM_1000032

Added

CLM_1000041 http://purl.obolibrary.org/obo/CLM_1000041

Added

CLM_1000043 http://purl.obolibrary.org/obo/CLM_1000043

Added

CLM_1000046 http://purl.obolibrary.org/obo/CLM_1000046

Added

CLM_1000047 http://purl.obolibrary.org/obo/CLM_1000047

Added

CLM_1000052 http://purl.obolibrary.org/obo/CLM_1000052

Added

CLM_1000053 http://purl.obolibrary.org/obo/CLM_1000053

Added

CLM_1000054 http://purl.obolibrary.org/obo/CLM_1000054

Added

CLM_1000056 http://purl.obolibrary.org/obo/CLM_1000056

Added

CLM_1000059 http://purl.obolibrary.org/obo/CLM_1000059

Added

CLM_1000061 http://purl.obolibrary.org/obo/CLM_1000061

Added

CLM_1000063 http://purl.obolibrary.org/obo/CLM_1000063

Added

CLM_1000065 http://purl.obolibrary.org/obo/CLM_1000065

Added

CLM_1000066 http://purl.obolibrary.org/obo/CLM_1000066

Added

CLM_1000067 http://purl.obolibrary.org/obo/CLM_1000067

Added

CLM_1000068 http://purl.obolibrary.org/obo/CLM_1000068

Added

CLM_1000069 http://purl.obolibrary.org/obo/CLM_1000069

Added

CLM_1000070 http://purl.obolibrary.org/obo/CLM_1000070

Added

CLM_1000071 http://purl.obolibrary.org/obo/CLM_1000071

Added

CLM_1000072 http://purl.obolibrary.org/obo/CLM_1000072

Added

CLM_1000073 http://purl.obolibrary.org/obo/CLM_1000073

Added

CLM_1000074 http://purl.obolibrary.org/obo/CLM_1000074

Added

CLM_1000075 http://purl.obolibrary.org/obo/CLM_1000075

Added

CLM_1000079 http://purl.obolibrary.org/obo/CLM_1000079

Added

CLM_1000080 http://purl.obolibrary.org/obo/CLM_1000080

Added

CLM_1000081 http://purl.obolibrary.org/obo/CLM_1000081

Added

CLM_1000082 http://purl.obolibrary.org/obo/CLM_1000082

Added

CLM_1000083 http://purl.obolibrary.org/obo/CLM_1000083

Added

CLM_1000085 http://purl.obolibrary.org/obo/CLM_1000085

Added

CNS interneuron http://purl.obolibrary.org/obo/CL_0000402

Added

GABAergic interneuron http://purl.obolibrary.org/obo/CL_0011005

Added

H1 horizontal cell http://purl.obolibrary.org/obo/CL_0004217

Added

H2 horizontal cell http://purl.obolibrary.org/obo/CL_0004218

Added

L2/3 intratelencephalic projecting glutamatergic neuron http://purl.obolibrary.org/obo/CL_4030059

Added

L4 intratelencephalic projecting glutamatergic neuron http://purl.obolibrary.org/obo/CL_4030063

Added

L5 extratelencephalic projecting glutamatergic cortical neuron http://purl.obolibrary.org/obo/CL_4023041

Added

L5 intratelencephalic projecting glutamatergic neuron http://purl.obolibrary.org/obo/CL_4030064

Added

L5/6 near-projecting glutamatergic neuron http://purl.obolibrary.org/obo/CL_4030067

Added

L6 corticothalamic-projecting glutamatergic cortical neuron http://purl.obolibrary.org/obo/CL_4023042

Added

L6 intratelencephalic projecting Car3 glutamatergic neuron http://purl.obolibrary.org/obo/CL_4030068

Added

L6 intratelencephalic projecting glutamatergic neuron http://purl.obolibrary.org/obo/CL_4030065

Added

L6b glutamatergic neuron of the primary motor cortex http://purl.obolibrary.org/obo/CL_4023046

Added

Lamp5 Lhx6 neuron http://purl.obolibrary.org/obo/CL_4042013

Added

MEIS2 expressing GABAergic neuron of the thalamus http://purl.obolibrary.org/obo/CL_4042043

Added

OFFx cell http://purl.obolibrary.org/obo/CL_4033036

Added

ON-blue cone bipolar cell http://purl.obolibrary.org/obo/CL_4033019

Added

PAX6 GABAergic cortical interneuron http://purl.obolibrary.org/obo/CL_4042032

Added

RO_0015004 http://purl.obolibrary.org/obo/RO_0015004

Added

Tc1 cell http://purl.obolibrary.org/obo/CL_0000917

Added

UBERON_0001875 http://purl.obolibrary.org/obo/UBERON_0001875

Added

VIP GABAergic cortical interneuron http://purl.obolibrary.org/obo/CL_4023016

Added

absorptive cell http://purl.obolibrary.org/obo/CL_0000212

Added

activated CD4-negative, CD8-negative type I NK T cell http://purl.obolibrary.org/obo/CL_0000928

Added

adipose macrophage http://purl.obolibrary.org/obo/CL_0002477

Added

airway submucosal gland collecting duct epithelial cell http://purl.obolibrary.org/obo/CL_4033023

Added

airway submucosal gland duct basal cell http://purl.obolibrary.org/obo/CL_4033024

Added

alveolar adventitial fibroblast http://purl.obolibrary.org/obo/CL_4028006

Added

alveolar macrophage http://purl.obolibrary.org/obo/CL_0000583

Added

alveolar type 1 fibroblast cell http://purl.obolibrary.org/obo/CL_4028004

Added

auditory epithelial cell http://purl.obolibrary.org/obo/CL_0002491

Added

bistratified retinal ganglion cell http://purl.obolibrary.org/obo/CL_0003001

Added

blood vessel smooth muscle cell http://purl.obolibrary.org/obo/CL_0019018

Added

brain vascular cell http://purl.obolibrary.org/obo/CL_4023072

Added

brainstem motor neuron http://purl.obolibrary.org/obo/CL_2000047

Added

bronchial goblet cell http://purl.obolibrary.org/obo/CL_1000312

Added

brown adipocyte http://purl.obolibrary.org/obo/CL_0000449

Added

brown preadipocyte http://purl.obolibrary.org/obo/CL_0002335

Added

brush cell of tracheobronchial tree http://purl.obolibrary.org/obo/CL_0002075

Added

cerebellar granule cell precursor http://purl.obolibrary.org/obo/CL_0002362

Added

chandelier cell http://purl.obolibrary.org/obo/CL_4023083

Added

chandelier pvalb GABAergic cortical interneuron http://purl.obolibrary.org/obo/CL_4023036

Added

cochlea auditory hair cell http://purl.obolibrary.org/obo/CL_4023120

Added

cone retinal bipolar cell http://purl.obolibrary.org/obo/CL_0000752

Added

conjunctiva goblet cell http://purl.obolibrary.org/obo/CL_2000084

Added

cranial motor neuron http://purl.obolibrary.org/obo/CL_0015000

Added

cycling alveolar macrophage http://purl.obolibrary.org/obo/CL_4033077

Added

cycling pulmonary alveolar type 2 cell http://purl.obolibrary.org/obo/CL_4033080

Added

deuterosomal cell http://purl.obolibrary.org/obo/CL_4033044

Added

diffuse bipolar 1 cell http://purl.obolibrary.org/obo/CL_4033027

Added

diffuse bipolar 2 cell http://purl.obolibrary.org/obo/CL_4033028

Added

diffuse bipolar 3a cell http://purl.obolibrary.org/obo/CL_4033029

Added

diffuse bipolar 3b cell http://purl.obolibrary.org/obo/CL_4033030

Added

diffuse bipolar 4 cell http://purl.obolibrary.org/obo/CL_4033031

Added

diffuse bipolar 6 cell http://purl.obolibrary.org/obo/CL_4033032

Added

direct pathway medium spiny neuron http://purl.obolibrary.org/obo/CL_4023026

Added

ectodermal cell http://purl.obolibrary.org/obo/CL_0000221

Added

efferent neuron http://purl.obolibrary.org/obo/CL_0000527

Added

embryonic blood vessel endothelial progenitor cell http://purl.obolibrary.org/obo/CL_0002546

Added

endo-epithelial cell http://purl.obolibrary.org/obo/CL_0002076

Added

epithelial cell of amnion http://purl.obolibrary.org/obo/CL_0002536

Added

epithelial cell of pancreas http://purl.obolibrary.org/obo/CL_0000083

Added

epithelial cell of parathyroid gland http://purl.obolibrary.org/obo/CL_0002260

Added

epithelial cell of thyroid gland http://purl.obolibrary.org/obo/CL_0002257

Added

eukaryotic cell http://purl.obolibrary.org/obo/CL_0000255

Removed

extraembryonic cell http://purl.obolibrary.org/obo/CL_0000349

Added

fibroblast of lymphatic vessel http://purl.obolibrary.org/obo/CL_0002554

Added

flat midget bipolar cell http://purl.obolibrary.org/obo/CL_4033033

Added

forebrain neuroblast http://purl.obolibrary.org/obo/CL_1000042

Added

giant bipolar cell http://purl.obolibrary.org/obo/CL_4033035

Added

gingival epithelial cell http://purl.obolibrary.org/obo/CL_0002621

Added

hepatic pit cell http://purl.obolibrary.org/obo/CL_2000054

Added

hypothalamus cell http://purl.obolibrary.org/obo/CL_2000030

Added

immature astrocyte http://purl.obolibrary.org/obo/CL_0002626

Added

indirect pathway medium spiny neuron http://purl.obolibrary.org/obo/CL_4023029

Added

inner medulla vasa recta ascending limb cell http://purl.obolibrary.org/obo/CL_1001209

Removed

Added

inner medulla vasa recta descending limb cell http://purl.obolibrary.org/obo/CL_1001286

Removed

Added

inner renal medulla vasa recta cell http://purl.obolibrary.org/obo/CL_1001126

Removed

intermediate mesodermal cell http://purl.obolibrary.org/obo/CL_0011011

Added

invaginating midget bipolar cell http://purl.obolibrary.org/obo/CL_4033034

Added

iris pigment epithelial cell http://purl.obolibrary.org/obo/CL_0002565

Added

kidney interstitial alternatively activated macrophage http://purl.obolibrary.org/obo/CL_1000695

Added

lamp5 GABAergic cortical interneuron http://purl.obolibrary.org/obo/CL_4023011

Added

lateral mesodermal cell http://purl.obolibrary.org/obo/CL_0011010

Added

luminal adaptive secretory precursor cell of mammary gland http://purl.obolibrary.org/obo/CL_4033057

Added

luminal hormone-sensing cell of mammary gland http://purl.obolibrary.org/obo/CL_4033058

Added

lung endothelial cell http://purl.obolibrary.org/obo/CL_1001567

Added

lung interstitial macrophage http://purl.obolibrary.org/obo/CL_4033043

Added

lung perichondrial fibroblast http://purl.obolibrary.org/obo/CL_4033026

Added

lung pericyte http://purl.obolibrary.org/obo/CL_0009089

Added

lung resident memory CD4-positive, alpha-beta T cell http://purl.obolibrary.org/obo/CL_4033038

Added

lung resident memory CD8-positive, alpha-beta T cell http://purl.obolibrary.org/obo/CL_4033039

Added

lymphocyte of B lineage http://purl.obolibrary.org/obo/CL_0000945

Added

meningeal macrophage http://purl.obolibrary.org/obo/CL_0000879

Added

metallothionein-positive alveolar macrophage http://purl.obolibrary.org/obo/CL_4033042

Added

metanephric mesenchyme stem cell http://purl.obolibrary.org/obo/CL_0000324

Added

microvascular endothelial cell http://purl.obolibrary.org/obo/CL_2000008

Added

midget ganglion cell of retina http://purl.obolibrary.org/obo/CL_4023188

Added

monocyte-derived dendritic cell http://purl.obolibrary.org/obo/CL_0011031

Added

mucus secreting cell of bronchus submucosal gland http://purl.obolibrary.org/obo/CL_4033022

Added

multiciliated columnar cell of tracheobronchial tree http://purl.obolibrary.org/obo/CL_0002145

Added

myelinating Schwann cell http://purl.obolibrary.org/obo/CL_0000218

Added

myeloid suppressor cell http://purl.obolibrary.org/obo/CL_0000889

Added

myoblast http://purl.obolibrary.org/obo/CL_0000056

Added

myocyte of sinoatrial node http://purl.obolibrary.org/obo/CL_1000409

Added

myotube http://purl.obolibrary.org/obo/CL_0002372

Added

nasal mucosa goblet cell http://purl.obolibrary.org/obo/CL_0002480

Added

non-myelinating Schwann cell http://purl.obolibrary.org/obo/CL_0002376

Added

noradrenergic cell http://purl.obolibrary.org/obo/CL_0000459

Added

notochordal cell http://purl.obolibrary.org/obo/CL_0007005

Added

obsolete animal cell http://purl.obolibrary.org/obo/CL_0000548

Removed

obsolete native cell http://purl.obolibrary.org/obo/CL_0000003

Removed

obsolete somatic cell http://purl.obolibrary.org/obo/CL_0002371

Removed

olfactory ensheathing cell http://purl.obolibrary.org/obo/CL_0011028

Added

olfactory epithelial cell http://purl.obolibrary.org/obo/CL_0002167

Added

olfactory receptor cell http://purl.obolibrary.org/obo/CL_0000207

Added

outer medulla vasa recta ascending limb cell http://purl.obolibrary.org/obo/CL_1001210

Removed

Added

outer medulla vasa recta descending limb cell http://purl.obolibrary.org/obo/CL_1001287

Removed

Added

outer renal medulla vasa recta cell http://purl.obolibrary.org/obo/CL_1001127

Removed

parasol ganglion cell of retina http://purl.obolibrary.org/obo/CL_4023189

Added

parasympathetic neuron http://purl.obolibrary.org/obo/CL_0011102

Added

perineuronal satellite cell http://purl.obolibrary.org/obo/CL_0000516

Added

perivascular cell http://purl.obolibrary.org/obo/CL_4033054

Added

phagocyte http://purl.obolibrary.org/obo/CL_0000234

Removed

pinealocyte http://purl.obolibrary.org/obo/CL_0000652

Added

preadipocyte http://purl.obolibrary.org/obo/CL_0002334

Added

primitive erythroid progenitor http://purl.obolibrary.org/obo/CL_0002361

Added

pulmonary alveolar type 1 cell http://purl.obolibrary.org/obo/CL_0002062

Added

pulmonary alveolar type 2 cell http://purl.obolibrary.org/obo/CL_0002063

Added

pulmonary interstitial fibroblast http://purl.obolibrary.org/obo/CL_0002241

Added

pulmonary ionocyte http://purl.obolibrary.org/obo/CL_0017000

Added

pulmonary neuroendocrine cell http://purl.obolibrary.org/obo/CL_1000223

Added

pvalb GABAergic cortical interneuron http://purl.obolibrary.org/obo/CL_4023018

Added

pvalb GABAergic neuron of the basal ganglia http://purl.obolibrary.org/obo/CL_4042041

Added

pvalb GABAergic neuron of the globus pallidus http://purl.obolibrary.org/obo/CL_4042042

Added

pvalb GABAergic neuron of the striatum http://purl.obolibrary.org/obo/CL_4042038

Added

respiratory tract suprabasal cell http://purl.obolibrary.org/obo/CL_4033048

Added

retinal astrocyte http://purl.obolibrary.org/obo/CL_4033015

Added

retinal progenitor cell http://purl.obolibrary.org/obo/CL_0002672

Added

sebocyte http://purl.obolibrary.org/obo/CL_0000317

Added

sensory neuron http://purl.obolibrary.org/obo/CL_0000101

Added

sensory neuron of dorsal root ganglion http://purl.obolibrary.org/obo/CL_1001451

Added

serous secreting cell of bronchus submucosal gland http://purl.obolibrary.org/obo/CL_4033005

Added

small bistratified retinal ganglion cell http://purl.obolibrary.org/obo/CL_4033053

Added

sncg GABAergic cortical interneuron http://purl.obolibrary.org/obo/CL_4023015

Added

spinal cord motor neuron http://purl.obolibrary.org/obo/CL_0011001

Added

spiral ganglion neuron http://purl.obolibrary.org/obo/CL_0011113

Added

splanchnic mesodermal cell http://purl.obolibrary.org/obo/CL_0017001

Added

sst GABAergic cortical interneuron http://purl.obolibrary.org/obo/CL_4023017

Added

sst chodl GABAergic cortical interneuron http://purl.obolibrary.org/obo/CL_4023121

Added

stromal cell of endometrium http://purl.obolibrary.org/obo/CL_0002255

Added

suprabasal keratinocyte http://purl.obolibrary.org/obo/CL_4033013

Added

thalamic excitatory neuron http://purl.obolibrary.org/obo/CL_4023068

Added

tracheobronchial smooth muscle cell http://purl.obolibrary.org/obo/CL_0019019

Added

type 1 cone bipolar cell (sensu Mus) http://purl.obolibrary.org/obo/CL_0000753

Added

type 2 cone bipolar cell (sensu Mus) http://purl.obolibrary.org/obo/CL_0000754

Added

type 3a cone bipolar cell http://purl.obolibrary.org/obo/CL_0004213

Added

type 3b cone bipolar cell http://purl.obolibrary.org/obo/CL_0004214

Added

type 4 cone bipolar cell (sensu Mus) http://purl.obolibrary.org/obo/CL_0000756

Added

type 5 cone bipolar cell (sensu Mus) http://purl.obolibrary.org/obo/CL_0000757

Added

type 5a cone bipolar cell http://purl.obolibrary.org/obo/CL_0004215

Added

type 5b cone bipolar cell http://purl.obolibrary.org/obo/CL_0004216

Added

type 6 cone bipolar cell (sensu Mus) http://purl.obolibrary.org/obo/CL_0000758

Added

type 7 cone bipolar cell (sensu Mus) http://purl.obolibrary.org/obo/CL_0000759

Added

type 8 cone bipolar cell (sensu Mus) http://purl.obolibrary.org/obo/CL_0000760

Added

type 9 cone bipolar cell (sensu Mus) http://purl.obolibrary.org/obo/CL_0000761

Added

type A enteroendocrine cell http://purl.obolibrary.org/obo/CL_0002067

Added

type I cell of adrenal cortex http://purl.obolibrary.org/obo/CL_0002099

Added

unipolar brush cell http://purl.obolibrary.org/obo/CL_4023161

Added

ureteric bud cell http://purl.obolibrary.org/obo/CL_4030066

Added

valve endothelial cell http://purl.obolibrary.org/obo/CL_4030033

Added

valve interstitial cell http://purl.obolibrary.org/obo/CL_4030032

Added

vasa recta cell http://purl.obolibrary.org/obo/CL_1001036

Removed

Copy link

github-actions bot commented Dec 4, 2024

Here's a diff of your edit file (unreasoned)

Ontology comparison

Left

  • Ontology IRI: http://purl.obolibrary.org/obo/cl.owl
  • Version IRI: None
  • Loaded from: file:/__w/cell-ontology/cell-ontology/master/src/ontology/cl-edit.owl

Right

  • Ontology IRI: http://purl.obolibrary.org/obo/cl.owl
  • Version IRI: None
  • Loaded from: file:/__w/cell-ontology/cell-ontology/branch/src/ontology/cl-edit.owl

Ontology imports

Ontology annotations

MEIS2 expressing GABAergic neuron of the thalamus http://purl.obolibrary.org/obo/CL_4042043

Added

globus pallidus http://purl.obolibrary.org/obo/UBERON_0001875

Added

pvalb GABAergic neuron of the basal ganglia http://purl.obolibrary.org/obo/CL_4042041

Added

pvalb GABAergic neuron of the globus pallidus http://purl.obolibrary.org/obo/CL_4042042

Added

pvalb GABAergic neuron of the striatum http://purl.obolibrary.org/obo/CL_4042038

Added

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