Bump actions/upload-artifact from 3 to 4 #22

	# This workflow will install Python dependencies, run tests and lint with a variety of Python versions
	# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions

	name: CI

	on:
	push:
	branches: [ master ]
	pull_request:
	branches: [ master ]

	jobs:
	build:

	runs-on: ubuntu-latest
	strategy:
	fail-fast: false
	matrix:
	python-version: ["3.8", "3.9", "3.10", "3.11"]

	steps:
	- name: Install system build dependencies
	run: \|
	sudo apt-get update
	sudo apt-get install -y build-essential make zlib1g-dev libssl-dev libpng-dev
	- uses: actions/checkout@v4
	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v5
	with:
	python-version: ${{ matrix.python-version }}
	- name: Build UCSC kent library
	run: \|
	make build-ucsc
	- name: Install Python dependencies
	run: \|
	python -m pip install --upgrade pip
	python -m pip install pytest
	python -m pip install cython numpy pandas
	if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
	- name: Build and install package
	run: \|
	DISTUTILS_DEBUG=1 python -m pip install -v -e .
	ldd -r bbi/cbbi*.so
	- name: Test with pytest
	run: \|
	pytest -v

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