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Add "Functional enrichment" part2 to stringApp.Rmd
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kozo2 committed Nov 23, 2019
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Expand Up @@ -287,6 +287,12 @@ It contains a table of enriched terms and corresponding information for each enr

*Which are the three most statistically significant terms?*

To explore only specific types of terms, e.g. GO terms, and to remove redundant terms from the table, click on the filter icon in the **Table panel** (leftmost icon).
Select the three types of GO terms, enable the option to **Remove redundant terms** and set **Redundancy cutoff** to 0.2.
In this way, you will see only the statistically significant GO terms that do not represent largely the same set of proteins within the network.
You can see which proteins are annotated with a given term by selecting the term in the **STRING Enrichment** panel.

*Do the functional terms assigned to a protein correlate with whether it is up- or down-regulated?*

# Exercise 3

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