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Md analysis version update #138

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merged 9 commits into from
Dec 17, 2024
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Bernadette-Mohr
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Update MDAnalysis to 2.8.0 to support Gromacs 2024. Relax Python dependency because MDAnalysis 2.8.0 requires Python >= 3.10, but nomad-lab supports Python >= 3.9.

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coveralls commented Dec 4, 2024

Pull Request Test Coverage Report for Build 12279327729

Details

  • 4 of 5 (80.0%) changed or added relevant lines in 2 files are covered.
  • No unchanged relevant lines lost coverage.
  • Overall coverage remained the same at 88.176%

Changes Missing Coverage Covered Lines Changed/Added Lines %
atomisticparsers/utils/mdanalysis.py 1 2 50.0%
Totals Coverage Status
Change from base Build 11841789780: 0.0%
Covered Lines: 6324
Relevant Lines: 7172

💛 - Coveralls

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@JFRudzinski JFRudzinski left a comment

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See my comment.

@@ -397,6 +396,7 @@ def get_force_field_parameters(self, gromacs_version: str = None) -> List[Dict]:
)
return []
gromacs_version = gromacs_version.split('.')[0] if gromacs_version else None
# ! This warning does not get triggered, why?
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Can we try to address this comment before merging? Is the version actually "2024" or it's something like "2024.1".

If it's necessary to leave the comment then at least add some info so it is clear what exactly what context the comment is referrring

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No, this is an old comment. An earlier error prevented the code from reaching this check at some point. I removed the comment now.

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@Bernadette-Mohr Bernadette-Mohr left a comment

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Removed old comment.

@@ -397,6 +396,7 @@ def get_force_field_parameters(self, gromacs_version: str = None) -> List[Dict]:
)
return []
gromacs_version = gromacs_version.split('.')[0] if gromacs_version else None
# ! This warning does not get triggered, why?
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No, this is an old comment. An earlier error prevented the code from reaching this check at some point. I removed the comment now.

@Bernadette-Mohr Bernadette-Mohr merged commit 6743668 into develop Dec 17, 2024
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4 participants