edit scallop.rda and remove unsued columns that are not necessary for…

… the vignette
noaa-nwfsc · Apr 30, 2024 · a29c554 · a29c554
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commit a29c554
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Showing 4 changed files with 3 additions and 15 deletions.
diff --git a/R/data.R b/R/data.R
@@ -7,21 +7,12 @@
 #' \describe{
 #'   \item{TRIPID}{Randomly assigned trip ID number.}
 #'   \item{DATE_TRIP}{Date of landing.}
-#'   \item{scallop_fishing_year}{Scallop fishing year.}
-#'   \item{OPERNUM}{Randomly assigned captains Identification number.}
 #'   \item{PERMIT.y}{Randomly assigned six-digit vessel fishing permit number.}
 #'   \item{TRIP_LENGTH}{Days calculated from the elapsed time between the 
 #'   date-time sailed and date-time landed; this is a measure of days absent.}
-#'   \item{DEALER_RPT_ID}{}
 #'   \item{GEARCODE}{Fishing gear used on the trip.}
-#'   \item{dbsource}{Primary data source for observation.}
-#'   \item{geoid}{10 digit county subdivision from US Census.}
-#'   \item{namelsad}{Port of landing.}
 #'   \item{port_lat}{Latitude of the geoid.}
 #'   \item{port_lon}{longitude of the geoid.}
-#'   \item{previous_namelsad}{Previous port of landing.}
-#'   \item{previous_state_fips}{Previous 2 digit state fips code.}
-#'   \item{previous_geoid}{Previous geoid.}
 #'   \item{previous_port_lat}{Previous latitude of geoid.}
 #'   \item{previous_port_lon}{Previous longitude of geoid.}
 #'   \item{Plan Code}{Portion of the VMS declaration code that identifies the 
@@ -38,8 +29,6 @@
 #'   99th percentile value, respectively.}
 #'   \item{DDLAT}{The latitude reported on a VTR (Vessel Trip Reports).}
 #'   \item{DDLON}{The longitude reported on a VTR (Vessel Trip Reports).}
-#'   \item{MN30SQID}{Unique identifier assigned to a thirty minute square.}
-#'   \item{MN10SQID}{Unique identifier assigned to a ten minute square.}
 #'   \item{NAME}{Name of wind lease which is found within a given ten minute square.}
 #'   \item{ZoneID}{FishSET's version of a ten minute square.}
 #'   \item{POUNDS}{Live pounds.}

diff --git a/R/map_viewer.R b/R/map_viewer.R
@@ -44,13 +44,12 @@ map_viewer <- function(dat, project, spat, avd, avm, num_vars, temp_vars, id_var
   #'            avd = 'ZoneID', avm = 'TEN_ID', num_vars = 'LANDED_thousands', 
   #'            temp_vars = 'DATE_TRIP', lon_start = 'previous_port_lon', 
   #'            lat_start = 'previous_port_lat', lon_end = 'DDLON', 
-  #'            lat_end = 'DDLAT', id_vars = 'previous_namelsad')
+  #'            lat_end = 'DDLAT')
   #'    
   #' # Plot observed fishing locations        
   #' map_viewer(scallopMainDataTable, 'scallop', "scallopTMSSpatTable", 
   #'            avd = 'ZoneID', avm = 'TEN_ID', num_vars = 'LANDED_thousands', 
-  #'            temp_vars = 'DATE_TRIP', lon_start = 'DDLON', lat_start = 'DDLAT', 
-  #'            id_vars = 'previous_namelsad')
+  #'            temp_vars = 'DATE_TRIP', lon_start = 'DDLON', lat_start = 'DDLAT')
   #' 
   #' #Plot haul path
   #' map_viewer(pollockMainDataTable, 'pollock', spat=spatdat, avd='NMFS_AREA',

diff --git a/data/scallop.rda b/data/scallop.rda
diff --git a/vignettes/scallop-mod-example.Rmd b/vignettes/scallop-mod-example.Rmd
@@ -65,7 +65,7 @@ scallop$LANDED_thousands<-scallop$LANDED_OBSCURED/1000
 scallop$DOLLAR_2020_thousands<-scallop$DOLLAR_2020_OBSCURED/1000
 
 vars_to_keep <- c('TRIPID', 'PERMIT.y', 'DATE_TRIP', 'DDLON', 'DDLAT', 'ZoneID', 
-                  'LANDED_thousands', 'DOLLAR_2020_thousands', 'port_lon', 'port_lat', 'previous_namelsad',
+                  'LANDED_thousands', 'DOLLAR_2020_thousands', 'port_lon', 'port_lat',
                   'previous_port_lon', 'previous_port_lat')
 scallop <- scallop[vars_to_keep]
 ```