add the geospatial stuff and cwutils and panoply

nmfs-opensci · Nov 5, 2024 · df47799 · df47799
1 parent 07e2ac8
commit df47799
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Showing 2 changed files with 29 additions and 8 deletions.
diff --git a/draft_images/test/Dockerfile b/draft_images/test/Dockerfile
@@ -4,12 +4,35 @@ RUN echo ${PATH}
 
 USER root
 RUN echo ${PATH}
-RUN /pyrocket_scripts/install-conda-packages.sh || echo "install-conda-packages.sh failed" || true
-RUN /pyrocket_scripts/install-r-package.sh || echo "install-r-package.sh failed" || true
-RUN /pyrocket_scripts/install-pip-packages.sh || echo "install-pip-packages.sh failed" || true
-RUN /pyrocket_scripts/install-apt-packages.sh || echo "install-apt-packages.sh failed" || true
+RUN /pyrocket_scripts/install-conda-packages.sh environment.yml || echo "install-conda-packages.sh failed" || true
+RUN /pyrocket_scripts/install-r-packages.sh install.R || echo "install-r-package.sh failed" || true
+RUN /pyrocket_scripts/install-pip-packages.sh requirements.txt || echo "install-pip-packages.sh failed" || true
+RUN /pyrocket_scripts/install-apt-packages.sh apt.txt || echo "install-apt-packages.sh failed" || true
+RUN /pyrocket_scripts/install-desktop.sh || echo "setup-desktop.sh failed" || true
 RUN /pyrocket_scripts/run-postbuild.sh || echo "run-postbuild.sh failed" || true
 RUN /pyrocket_scripts/setup-start.sh || echo "setup-start.sh failed" || true
-RUN /pyrocket_scripts/setup-desktop.sh || echo "setup-desktop.sh failed" || true
 USER ${NB_USER}
 
+USER root
+# install the geospatial libraries and R spatial; the rocket script are part of py-rocket-base
+RUN PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin && \
+    /rocker_scripts/install_geospatial.sh
+
+# Install cwutils
+RUN cd /tmp && \
+    wget https://www.star.nesdis.noaa.gov/socd/coastwatch/cwf/cwutils-4_0_0_198-linux-x86_64.tar.gz && \
+    tar -zxf cwutils-4_0_0_198-linux-x86_64.tar.gz && \
+    rm -rf cwutils-4_0_0_198-linux-x86_64.tar.gz
+ENV PATH=${PATH}:/tmp/cwutils_4.0.0.198/bin
+ENV MANPATH=${MANPATH}:/tmp/cwutils_4.0.0.198/doc/man
+ENV INSTALL4J ADD VM PARAMS=-Dsun.java2d.uiScale=2.0
+
+# Install panoply
+RUN cd /tmp && \
+  wget --user-agent="Mozilla/5.0" https://www.giss.nasa.gov/tools/panoply/download/PanoplyJ-5.5.4.tgz && \
+  tar -zxf PanoplyJ-5.5.4.tgz && \
+  rm -rf PanoplyJ-5.5.4.tgz
+ENV PATH=${PATH}:/tmp/PanoplyJ
+
+USER ${NB_USER}
+WORKDIR ${HOME}
diff --git a/draft_images/test/apt.txt b/draft_images/test/apt.txt
@@ -1,5 +1,3 @@
-# Some useful stuff
+# for qgis
 libgl1-mesa-glx
 
-# Add some more
-# or not