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WIP: adding Philips XML/REC support#683

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grlee77 wants to merge 16 commits intonipy:masternipy/nibabel:masterfrom grlee77:xmlrec_v2grlee77/nibabel:xmlrec_v2Copy head branch name to clipboard

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Commits on Oct 18, 2018

• add Philips XML/REC reader.

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• add XMLRECImage support to imageclasses.py

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Commits on Oct 19, 2018

• Assign an enumerated value of -1 in the PAR image_defs header for unrecognized enum strings.

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• expand enums_dict using empirically determined values

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• Fix reading strings into image_defs when dtype_format='xml'

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• XMLRECImage: file extensions should be specified in lower case

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• loading from .REC: special case to find .xml when .PAR not present

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• remove explicit mention of PAR from warning/errors that could also occur for XML/REC

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• Add XML/REC support to parrec2nii.py

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• refactor/simplify. Do not convert to PAR/REC style names

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• remove permit_truncated restriction

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• minor cleanup

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Commits on Oct 22, 2018

• XMLRECImage: fix for .REC expected case mismatch

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• fix misnamed key within strict_sort

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• fix for conversion of DWI scans where only the trace was retained

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• fix bug in conversion of Boolean entries from string such as 'N' and 'Y'

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