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~October 2022~ April 2023 release #561

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Apr 28, 2023
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~October 2022~ April 2023 release #561

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2dd0c06
add more history
raynamharris Aug 2, 2022
02e97b4
Merge branch 'dev' into add-history
jeremywalter Apr 18, 2023
3accfcf
Merge pull request #557 from nih-cfde/add-history
raynamharris Apr 28, 2023
4d990c8
fix broken link
raynamharris Apr 28, 2023
fcecc43
for real fixed a a broken link
raynamharris Apr 28, 2023
807d3d4
Merge pull request #560 from nih-cfde/raynamharris-patch-1
raynamharris Apr 28, 2023
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2 changes: 1 addition & 1 deletion README.md
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The `stable` branch of this repository builds the public training materials for the CFDE at https://training.nih-cfde.org. The `dev` branch contains updates that will be merged as part of the next [release](https://github.com/nih-cfde/training-and-engagement/blob/dev/docs/TrainingRepoReleasePlan/TrainingRepo-Release-Plan.md).

The training website hosts tutorials and resources to learn how to perform bioinformatic analyses and access data. The GitHub repository contains CFDE internal resources, including the [website style guide](https://training.nih-cfde.org/en/latest/Website-Style-Guide) and [website release protocol](./docs/TrainingRepoReleasePlan/TrainingRepo-Release-Plan.md).
The training website hosts tutorials and resources to learn how to perform bioinformatic analyses and access data. The GitHub repository contains CFDE internal resources, including the [website style guide](https://training.nih-cfde.org/en/latest/Website-Style-Guide) and [website release protocol](https://training.nih-cfde.org/en/latest/Website-Style-Guide/7ReleasePlan/).

Check out our [wiki pages](https://github.com/nih-cfde/training-and-engagement/wiki) for past workshop notes, mini tutorials on setup, and workshop attendee resources (i.e., for managing screen space).

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62 changes: 41 additions & 21 deletions docs/Release-Notes/history.md
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<link rel="stylesheet" href="https://maxcdn.bootstrapcdn.com/font-awesome/4.6.1/css/font-awesome.min.css">

# Workshop History
# Training History

Below is a list of past CFDE workshops with links to workshop resources.
Below is a list of past workshops and other training events with links to resources and videos.

## 2022
## Demonstrations

* [Introduction to R for RNA Sequencing Analysis](https://hackmd.io/MsWY1O9GQXGVDl2OmV2jxg) _May 11, 2022_ [<i class="fa fa-camera-retro fa-lg"></i>](https://video.ucdavis.edu/media/CFDE+May+Hackathon+-+Intro+to+R+for+RNA-Seq/1_61sjku7o)
* [CFDE Portal Demo with HMP Data, AWS, and sourmash](https://hackmd.io/dW9EoOh3T42eed9q21NLJQ?view#) _May 10, 2022_ [<i class="fa fa-camera-retro fa-lg"></i>](https://video.ucdavis.edu/media/t/1_yze086oo)
* [Introduction to R for RNA Sequencing Analysis](https://hackmd.io/SnorsWTbTTyRenptpjrhww?view) _April 27, 2022_
* [Introduction to R for RNA Sequencing Analysis](https://hackmd.io/2ArmQGwGT0uUyL5Ehqy0hQ) _March 23, 2022_  
* [RNA-Seq in the Cloud](https://osf.io/txcw8/) _March 7 and 9, 2022_  
* Overview of the CFDE Search Portal - 5 min. [<i class="fa fa-camera-retro fa-lg"></i>](https://www.youtube.com/watch?v=0ZBvVIQHbXU)
* Submitting data to the CFDE Search Portal - 5 min [<i class="fa fa-camera-retro fa-lg"></i>](https://www.loom.com/share/9a51c13e443740a3905db51679288378)

## Hackathons

_[May Hackathon Playlist (requires UC Davis login)](https://video.ucdavis.edu/channel/Common+Fund+Data+Ecosystem+%28CFDE%29+May+2022+Hackathon/259945432)_

* Exploring SPARC Data on Organ-nervous System Connectivity _May 11, 2022_ [<i class="fa fa-camera-retro fa-lg"></i>](https://video.ucdavis.edu/media/CFDE+May+Hackathon+-+SPARC+Exploration/1_vt6hfw62/259945432)
* [Introduction to R for RNA Sequencing Analysis with GTEx data](https://hackmd.io/MsWY1O9GQXGVDl2OmV2jxg) _May 11, 2022_ [<i class="fa fa-camera-retro fa-lg"></i>](https://video.ucdavis.edu/media/CFDE+May+Hackathon+-+Intro+to+R+for+RNA-Seq/1_61sjku7o)
* Knowledge Graph to Access and Analyze Common Fund Data from KidsFirst and HuBMAP _May 10, 2022_ [<i class="fa fa-camera-retro fa-lg"></i>](https://video.ucdavis.edu/media/CFDE+May+Hackathon+-+Knowledge+Graph/1_blpnnnz8/259945432)
* [iHMP Data Exploration with AWS and sourmash](https://hackmd.io/dW9EoOh3T42eed9q21NLJQ?view#) _May 10, 2022_ [<i class="fa fa-camera-retro fa-lg"></i>](https://video.ucdavis.edu/media/t/1_yze086oo)
* [CFDE Portal Demo](https://app.nih-cfde.org/) _May 9, 2022_ [<i class="fa fa-camera-retro fa-lg"></i>](https://video.ucdavis.edu/media/CFDE+May+Hackathon+-+Portal+Demo/1_isfmcnh8/259945432)
* [Introduction SigCom LINCS Search Engine](https://nih-cfde.github.io/2022-feb-hackathon/about/) _February 24, 2022_
* [Extracellular RNA Communication (exRNA)](https://nih-cfde.github.io/2022-feb-hackathon/about/) _February 23, 2022_
* [Introduction to to the Metabolomics Workbench](https://nih-cfde.github.io/2022-feb-hackathon/about/) _February 22, 2022_
* [Introduction to AWS with Human Microbiome Project (HMP) Data](https://hackmd.io/9EWhx5vYR3SDmd1Nl9rpyQ?view) _February 22, 2022_ [<i class="fa fa-camera-retro fa-lg"></i>](https://video.ucdavis.edu/media/Hackathon+-+Day+2+-+HMP/1_evaoqlpg)
* [CFDE Portal Demo](https://app.nih-cfde.org/) _February 21, 2022_ [<i class="fa fa-camera-retro fa-lg"></i>](https://video.ucdavis.edu/media/Hackathon+-+Day+1+-+Portal+Demo/1_cr0ert97)

## August Compute Series

* [Introduction to AWS for Cloud Computing](https://ngs-docs.github.io/2021-august-remote-computing/making-use-of-on-demand-cloud-computers-from-amazon-web-services.html) _August 31, 2021_  
* [Using SLURM on HPC](https://ngs-docs.github.io/2021-august-remote-computing/executing-large-analyses-on-hpc-clusters-with-slurm.html) _August 26, 2021_
* [Automating using Snakemake](https://ngs-docs.github.io/2021-august-remote-computing/automating-your-analyses-with-the-snakemake-workflow-system.html) _August 25, 2021_
* [Using Version Control](https://ngs-docs.github.io/2021-august-remote-computing/keeping-track-of-your-files-with-version-control.html) _August 24, 2021_
* [Automating Analyses](https://ngs-docs.github.io/2021-august-remote-computing/automating-your-analyses-and-executing-long-running-analyses-on-remote-computers.html) _August 19, 2021_  
* [Structuring Project Folders](https://ngs-docs.github.io/2021-august-remote-computing/structuring-your-projects-for-current-and-future-you.html) _August 17, 2021_  
* [Installing Software with Conda](https://ngs-docs.github.io/2021-august-remote-computing/installing-software-on-remote-computers-with-conda.html) _August 13, 2021_
* [Running Programs and Retrieving Results](https://ngs-docs.github.io/2021-august-remote-computing/running-programs-on-remote-computers-and-retrieving-the-results.html) _August 12, 2021_  
* [Connecting Remote Computers with SSH](https://ngs-docs.github.io/2021-august-remote-computing/connecting-to-remote-computers-with-ssh.html) _August 10, 2021_
* [Creating & Modifying Text Files](https://ngs-docs.github.io/2021-august-remote-computing/creating-and-modifying-text-files-on-remote-computers.html) _August 4, 2021_ 
* [Introduction to UNIX Command Line](https://ngs-docs.github.io/2021-august-remote-computing/introduction-to-the-unix-command-line.html) _August 3, 2021_

## Wednesday Workshops

_[Workshop Playlist (requires UC Davis login)](https://video.ucdavis.edu/channel/Common+Fund+Data+Ecosystem+%28CFDE%29+Training+Videos/184508093)_

### 2022

* [Introduction to R for RNA Sequencing Analysis](https://hackmd.io/SnorsWTbTTyRenptpjrhww?view) _April 27, 2022_
* [Introduction to R for RNA Sequencing Analysis](https://hackmd.io/2ArmQGwGT0uUyL5Ehqy0hQ) _March 23, 2022_  
* [RNA-Seq in the Cloud](https://osf.io/txcw8/) _March 7 and 9, 2022_  
* [RNA-Seq Concepts, Design and Workflows](https://osf.io/kj5av/) _February 15, 2022_
* [Introduction to AWS for Cloud Computing](https://github.com/nih-cfde/training-and-engagement/wiki/A-Hands-on-Introduction-to-AWS-for-Cloud-Computing-January-26,-2022) _January 26, 2022_
* [Introduction to UNIX for Cloud Computing](https://github.com/nih-cfde/training-and-engagement/wiki/An-Introduction-to-UNIX-for-Remote-Computing:-January-19,-2022) _January 19, 2022_    

## 2021
### 2021

* [An Introduction to AWS for Cloud Computing](https://github.com/nih-cfde/training-and-engagement/wiki/A-Hands-On-Introduction-to-AWS:-December-15,-2021) _December 15, 2021_
* [An Introduction to UNIX for Cloud Computing](https://github.com/nih-cfde/training-and-engagement/wiki/An-Introduction-to-UNIX-for-Cloud-Computing---December-8,-2021) _December 8, 2021_
Expand All @@ -35,17 +66,6 @@ Below is a list of past CFDE workshops with links to workshop resources.
* [Introduction to Conda](https://github.com/nih-cfde/training-and-engagement/wiki/A-Hands-On-Introduction-to-Conda:-October-6,-2021) _October 6, 2021_  
* [RNA-Seq in the Cloud](https://github.com/nih-cfde/training-and-engagement/wiki/RNA-Seq-in-the-cloud:-June-21-&-23,-2021) _September 21 & 23, 2021_
* [RNA-Seq Concepts, Design and Workflows](https://osf.io/txcw8/) _September 22, 2021_  
* [Introduction to AWS for Cloud Computing](https://ngs-docs.github.io/2021-august-remote-computing/making-use-of-on-demand-cloud-computers-from-amazon-web-services.html) _August 31, 2021_  
* [Using SLURM on HPC](https://ngs-docs.github.io/2021-august-remote-computing/executing-large-analyses-on-hpc-clusters-with-slurm.html) _August 26, 2021_  
* [Automating using Snakemake](https://ngs-docs.github.io/2021-august-remote-computing/automating-your-analyses-with-the-snakemake-workflow-system.html) _August 25, 2021_
* [Using Version Control](https://ngs-docs.github.io/2021-august-remote-computing/keeping-track-of-your-files-with-version-control.html) _August 24, 2021_
* [Automating Analyses](https://ngs-docs.github.io/2021-august-remote-computing/automating-your-analyses-and-executing-long-running-analyses-on-remote-computers.html) _August 19, 2021_  
* [Structuring Project Folders](https://ngs-docs.github.io/2021-august-remote-computing/structuring-your-projects-for-current-and-future-you.html) _August 17, 2021_  
* [Installing Software with Conda](https://ngs-docs.github.io/2021-august-remote-computing/installing-software-on-remote-computers-with-conda.html) _August 13, 2021_
* [Running Programs and Retrieving Results](https://ngs-docs.github.io/2021-august-remote-computing/running-programs-on-remote-computers-and-retrieving-the-results.html) _August 12, 2021_  
* [Connecting Remote Computers with SSH](https://ngs-docs.github.io/2021-august-remote-computing/connecting-to-remote-computers-with-ssh.html) _August 10, 2021_
* [Creating & Modifying Text Files](https://ngs-docs.github.io/2021-august-remote-computing/creating-and-modifying-text-files-on-remote-computers.html) _August 4, 2021_ 
* [Introduction to UNIX Command Line](https://ngs-docs.github.io/2021-august-remote-computing/introduction-to-the-unix-command-line.html) _August 3, 2021_  
* [Introduction to R](https://github.com/nih-cfde/training-and-engagement/wiki/Introduction-to-R:-July-28,-2021) _July 28, 2021_  
* [RNA-Seq Concepts, Design and Workflows](https://osf.io/txcw8/) _July 21, 2021_  
* [A Hands-On Introduction to Conda](https://github.com/nih-cfde/training-and-engagement/wiki/A-Hands-On-Introduction-to-Conda:-July-14,-2021) _July 14, 2021_
Expand All @@ -67,7 +87,7 @@ Below is a list of past CFDE workshops with links to workshop resources.
* [Introduction to AWS for Cloud Computing](https://github.com/nih-cfde/training-and-engagement/wiki/A-Hands-On-Introduction-to-AWS:-February-25,-2021) _Feb 25, 2021_
* [Introduction to AWS for Cloud Computing](https://github.com/nih-cfde/training-and-engagement/wiki/A-Hands-On-Introduction-to-AWS:-January-29,-2021) _Jan 29, 2021_

## 2020
### 2020

* [Introduction to the Kids First Data Resource Portal](https://training.nih-cfde.org/en/latest/Common-Fund-Tools/Kids-First/) _Dec 17, 2020_
* [Introduction to AWS for Cloud Computing](https://github.com/nih-cfde/training-and-engagement/wiki/A-Hands-On-Introduction-to-AWS:-December-1,-2020) _Dec 1, 2020_ 
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