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drug selector #38

Merged
merged 6 commits into from
Sep 14, 2020
Merged

drug selector #38

merged 6 commits into from
Sep 14, 2020

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allaway
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@allaway allaway commented Jul 15, 2020

Basic drug selection module. This branch is live! https://shiny.synapse.org/users/rallaway/kairos/

Check it out and let me know if you have any feedback. I'd like to merge this soon because develop has started to get ahead of this branch in some places.

@allaway allaway requested a review from jaybee84 July 15, 2020 23:29
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Looks really nice! and Yay! kairos is live!

Couple of things are not working as expected:

  1. The "Most Variable LV" plot is not rendering (likely due to the server-side dependencies)
  2. Select cellLines tab is not letting me uncheck all checkboxes (specifically for nf1 and nf2 checkboxes, I cant uncheck +/+ and unknown), is this by design?
  3. If I add more than cisplatin in the select drugs tab, only cisplatin is being plotted in the dose-response tab (wondering if it is due to demo data restrictions)
  4. The top plot in the dose-response tab is not rendering (not sure why)

Also, wondering if it makes sense to combine 'select cell line' and 'select drug' tabs into one "Selection" tab since both of them have a lot of empty real estate :)

@allaway
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allaway commented Jul 18, 2020

Thanks for the quick review!

I can reproduce #1. #2 is not by design, but I had noticed this a while back and meant to fix it, obviously forgot!

#3 and #4 I can not reproduce. I see:
Screen Shot 2020-07-17 at 6 08 10 PM

but perhaps this is because you selected a different set of cell lines? This is with everything selected.

@allaway allaway merged commit a4e0beb into develop Sep 14, 2020
@allaway allaway deleted the drug-selector branch September 14, 2020 15:20
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2 participants