Strip params docs #700
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Strip params docs #700
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(Rebased with upstream changes) |
People can read about these on nf-core/configs I think, as that's where the config profile is kept.
mashehu
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Jul 30, 2020
nf_core/pipeline-template/{{cookiecutter.name_noslash}}/docs/usage.md
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mashehu
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Jul 30, 2020
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| ## Reference genomes | ||
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| The pipeline config files come bundled with paths to the illumina iGenomes reference index files. If running with docker or AWS, the configuration is set up to use the [AWS-iGenomes](https://ewels.github.io/AWS-iGenomes/) resource. |
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I think the pipeline schema template doesn't explain what iGenomes is. I liked this and the longer explanation in line 78+, otherwise it seems rather cryptic to newcomers.
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I added a link to the website docs in the schema in cb72dda - is this ok?
We're probably dropping all if iGenomes soon anyway, so I'm not too fussed.
ggabernet
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Jul 30, 2020
nf_core/pipeline-template/{{cookiecutter.name_noslash}}/nextflow_schema.json
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…ow_schema.json Co-authored-by: Gisela Gabernet <gisela.gabernet@gmail.com>
mashehu
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Jul 30, 2020
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Start stripping out parameter docs from template
usage.md. See #647