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add apptainer.registry #2352

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Jun 30, 2023
Merged

add apptainer.registry #2352

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185ecf0
Update nextflow.config
maxulysse Jun 30, 2023
9d39716
Update CHANGELOG.md
maxulysse Jun 30, 2023
de0c247
Update CHANGELOG.md
maxulysse Jun 30, 2023
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1 change: 1 addition & 0 deletions CHANGELOG.md
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Expand Up @@ -17,6 +17,7 @@
- Fix parsing of container directive when it is not typical nf-core format ([#2306](https://github.com/nf-core/tools/pull/2306))
- Add ability to specify custom registry for linting modules, defaults to quay.io ([#2313](https://github.com/nf-core/tools/pull/2313))
- Add `singularity.registry = 'quay.io'` in pipeline template ([#2305](https://github.com/nf-core/tools/pull/2305))
- Add `apptainer.registry = 'quay.io'` in pipeline template ([#2352](https://github.com/nf-core/tools/pull/2352))
- Bump minimum required NF version in pipeline template from `22.10.1` -> `23.04.0` ([#2305](https://github.com/nf-core/tools/pull/2305))
- Add ability to interpret `docker.registry` from `nextflow.config` file. If not found defaults to quay.io. ([#2318](https://github.com/nf-core/tools/pull/2318))
- Add functions to dynamically include pipeline tool citations in MultiQC methods description section for better reporting. ([#2326](https://github.com/nf-core/tools/pull/2326))
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7 changes: 4 additions & 3 deletions nf_core/pipeline-template/nextflow.config
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Expand Up @@ -179,12 +179,13 @@ profiles {
test_full { includeConfig 'conf/test_full.config' }
}

// Set default registry for Docker and Podman independent of -profile
// Will not be used unless Docker / Podman are enabled
// Set default registry for Apptainer, Docker, Podman and Singularity independent of -profile
// Will not be used unless Apptainer / Docker / Podman / Singularity are enabled
// Set to your registry if you have a mirror of containers
singularity.registry = 'quay.io'
apptainer.registry = 'quay.io'
docker.registry = 'quay.io'
podman.registry = 'quay.io'
singularity.registry = 'quay.io'

// Nextflow plugins
plugins {
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