Check structure of update entry in .nf-core.yml

[mirpedrol]

Check that the structure of the update entry in .nf-core.yml is updated.
Should be

update:
  repo url:
    component install directory:
      component name:

Instead of

update:
  nf-core/modules:
    component name:

When a modules or subworkflow is set to false, the update doesn't fail, just skips this component (and it's dependencies in case of subworkflows).

PR checklist

• This comment contains a description of changes (with reason)
• CHANGELOG.md is updated
• If you've fixed a bug or added code that should be tested, add tests!
• Documentation in docs is updated

[codecov]

Codecov Report

Merging #2037 (1ee11b0) into dev (4bf70e1) will decrease coverage by 0.00%.
The diff coverage is 33.33%.

@@            Coverage Diff             @@
##              dev    #2037      +/-   ##
==========================================
- Coverage   67.61%   67.60%   -0.01%     
==========================================
  Files          43       43              
  Lines        5567     5572       +5     
==========================================
+ Hits         3764     3767       +3     
- Misses       1803     1805       +2     

Impacted Files	Coverage Δ
nf_core/components/update.py	81.67% <33.33%> (-0.54%)	⬇️
nf_core/modules/test_yml_builder.py	49.54% <0.00%> (+0.45%)	⬆️

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[awgymer]

This, along with some of the other changes in recent PRs, and the potential of adding org_path to the config file made me wonder if we have defined somewhere the full list of what can be put and/or is expected in the .nf-core.yml?
Is it worth considering creating a simple schema?

[mashehu]

I don't think we have it listed somewhere, but some documentation would for sure be helpful. not sure if we need to write a schema for it, because we already have so many config files, but some linting would for sure be good. On the other hand, we could the documentation with a schema, hmm 🤔

[awgymer]

Ok I created a new issue so we can discuss/monitor without polluting this PR