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Using a multiple alias import like below, causes nf-core lint to throw a warning.
include { SAMTOOLS_INDEX as SAMTOOLS_INDEX_MEM; SAMTOOLS_INDEX as SAMTOOLS_INDEX_BT2; SAMTOOLS_INDEX as SAMTOOLS_INDEX_MERGED_LANES } from '../../modules/nf-core/samtools/index/main'
Warning:
│ map │ subworkflows/local/map.nf │ Included component 'SAMTOOLS_INDEX_MEM; SAMTOOLS_INDEX' versions are not │
│ │ │ added in main.nf |
In the example, the module name is read in wrong as SAMTOOLS_INDEX_MEM; SAMTOOLS_INDEX instead of SAMTOOLS_INDEX_MEM, so checks for versions and use of the module throw warnings.
Command used and terminal output
nf-core lint
System information
nf-core v2.12.1
The text was updated successfully, but these errors were encountered:
Description of the bug
Using a multiple alias import like below, causes nf-core lint to throw a warning.
In the example, the module name is read in wrong as
SAMTOOLS_INDEX_MEM; SAMTOOLS_INDEX
instead ofSAMTOOLS_INDEX_MEM
, so checks for versions and use of the module throw warnings.Command used and terminal output
nf-core lint
System information
nf-core v2.12.1
The text was updated successfully, but these errors were encountered: