Merge pull request #2397 from adamrtalbot/use_one_testing_workflow

Remove fixed Ubuntu 20.04 testing workflow

.github/workflows/pytest.yml

@@ -14,12 +14,19 @@ concurrency:
   group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }}
   cancel-in-progress: true
 
+env:
+  GITHUB_TOKEN: ${{ github.token }}
+
 jobs:
   pytest:
-    runs-on: ubuntu-latest
+    runs-on: ${{ matrix.runner }}
     strategy:
       matrix:
         python-version: ["3.8", "3.9", "3.10", "3.11"]
+        runner: ["ubuntu-latest"]
+        include:
+          - runner: "ubuntu-20.04"
+            python-version: "3.8"
 
     steps:
       - uses: actions/checkout@v3
@@ -35,6 +42,14 @@ jobs:
           python -m pip install --upgrade pip -r requirements-dev.txt
           pip install -e .
 
+      - name: Downgrade git to the Ubuntu official repository's version
+        if: ${{ matrix.runner == 'ubuntu-20.04' && matrix.python-version == '3.8' }}
+        run: |
+          sudo apt update
+          sudo apt remove git git-man
+          sudo add-apt-repository --remove ppa:git-core/ppa
+          sudo apt install git
+
       - name: Install Nextflow
         uses: nf-core/setup-nextflow@v1
         with:

CHANGELOG.md

@@ -9,6 +9,7 @@
 - Add module MULTIQC to modules.config ([#2377](https://github.com/nf-core/tools/pull/2377))
 - Update the Code of Conduct ([#2381](https://github.com/nf-core/tools/pull/2381))
 - Save template information to `.nf-core.yml` and deprecate argument `--template-yaml` for `nf-core sync` ([#2388](https://github.com/nf-core/tools/pull/2388) and [#2389](https://github.com/nf-core/tools/pull/2389))
+- Remove fixed Ubuntu test and added to standard testing matrix
 
 ### Download