Merge pull request #1673 from mahesh-panchal/dev

Add gitpod and mamba profiles to the pipeline template
nf-core · Jul 14, 2022 · 2763932 · 2763932
2 parents 77f43e8 + cacb9b2
commit 2763932
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -7,6 +7,7 @@
 - Fix bug in pipeline readme logo URL ([#1590](https://github.com/nf-core/tools/pull/1590))
 - Switch CI to use [setup-nextflow](https://github.com/nf-core/setup-nextflow) action to install Nextflow ([#1650](https://github.com/nf-core/tools/pull/1650))
 - Add `CITATION.cff` [#361](https://github.com/nf-core/tools/issues/361)
+- Add Gitpod and Mamba profiles to the pipeline template ([#1673](https://github.com/nf-core/tools/pull/1673))
 
 ### Linting
 

diff --git a/nf_core/pipeline-template/nextflow.config b/nf_core/pipeline-template/nextflow.config
@@ -87,6 +87,15 @@ profiles {
         shifter.enabled        = false
         charliecloud.enabled   = false
     }
+    mamba {
+        params.enable_conda    = true
+        conda.useMamba         = true
+        docker.enabled         = false
+        singularity.enabled    = false
+        podman.enabled         = false
+        shifter.enabled        = false
+        charliecloud.enabled   = false
+    }
     docker {
         docker.enabled         = true
         docker.userEmulation   = true
@@ -124,6 +133,11 @@ profiles {
         podman.enabled         = false
         shifter.enabled        = false
     }
+    gitpod {
+        executor.name          = 'local'
+        executor.cpus          = 16
+        executor.memory        = 60.GB
+    }
     test      { includeConfig 'conf/test.config'      }
     test_full { includeConfig 'conf/test_full.config' }
 }