Test linting latest version #8
Workflow file for this run
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name: nf-core template version comment | |
# This workflow is triggered on PRs to check if the pipeline template version matches the latest. | |
# It posts a comment on the PR, even if it comes from a fork. | |
on: | |
pull_request_target: | |
jobs: | |
check_version: | |
runs-on: ubuntu-latest | |
steps: | |
- name: Check out pipeline code | |
uses: actions/checkout@0ad4b8fadaa221de15dcec353f45205ec38ea70b # v4 | |
- name: Read template version from .nf-core.yml | |
uses: pietrobolcato/action-read-yaml@1.0.0 | |
id: read_yml | |
with: | |
config: ${{ github.workspace }}/.nf-core.yml | |
- name: Install dependencies | |
run: | | |
python -m pip install --upgrade pip | |
pip install nf-core==${{ steps.read_yml.outputs['nf_core_version'] }} | |
- name: Check nf-core outdated | |
id: nf_core_outdated | |
run: pip list --outdated | grep nf-core | |
- name: Post nf-core last version comment | |
uses: mshick/add-pr-comment@b8f338c590a895d50bcbfa6c5859251edc8952fc # v2 | |
if: | | |
${{ steps.nf_core_outdated.outputs.stdout }} =~ 'nf-core' | |
with: | |
repo-token: ${{ secrets.GITHUB_TOKEN }} | |
allow-repeats: false | |
message: | | |
## :warning: New nf-core template version available | |
Your pipeline is using an old version of the nf-core template: ${{ steps.read_yml.outputs['nf_core_version'] }}. | |
Please update your pipeline to the latest version. |