why is multiqc not working?

nf-core · Oct 28, 2024 · d430a27 · d430a27
1 parent f4dc19a
commit d430a27
Showing 1 changed file with 1 addition and 2 deletions.
diff --git a/workflows/seqinspector.nf b/workflows/seqinspector.nf
@@ -39,7 +39,7 @@ workflow SEQINSPECTOR {
     FASTQC (
         ch_samplesheet
     )
-    ch_multiqc_files = ch_multiqc_files.mix(FASTQC.out.zip)
+    ch_multiqc_files = ch_multiqc_files.mix(FASTQC.out.zip.collect{it[1]}.ifEmpty([]))
     ch_versions = ch_versions.mix(FASTQC.out.versions.first())
 
     //
@@ -48,7 +48,6 @@ workflow SEQINSPECTOR {
     PHYLOGENETIC_QC (
         ch_samplesheet
     )
-
     ch_multiqc_files = ch_multiqc_files.mix(PHYLOGENETIC_QC.out.mqc.collect{it[1]}.ifEmpty([]))
     ch_versions = ch_versions.mix(PHYLOGENETIC_QC.out.versions)