fixi harshil alignment and removal commented code

nf-core · Dec 23, 2024 · f1f1524 · f1f1524
1 parent 7fdfd14
commit f1f1524
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diff --git a/subworkflows/local/align_longreads.nf b/subworkflows/local/align_longreads.nf
@@ -3,13 +3,13 @@
 //
 
 // SUBWORKFLOWS
-include { BAM_SORT_STATS_SAMTOOLS } from '../../subworkflows/nf-core/bam_sort_stats_samtools/main'
+include { BAM_SORT_STATS_SAMTOOLS                                     } from '../../subworkflows/nf-core/bam_sort_stats_samtools/main'
 include { BAM_SORT_STATS_SAMTOOLS as BAM_SORT_STATS_SAMTOOLS_FILTERED } from '../../subworkflows/nf-core/bam_sort_stats_samtools/main'
 
 // MODULES
 include { MINIMAP2_INDEX         } from '../../modules/nf-core/minimap2/index'
 include { MINIMAP2_ALIGN         } from '../../modules/nf-core/minimap2/align'
-include { SAMTOOLS_VIEW   } from '../../modules/nf-core/samtools/view'
+include { SAMTOOLS_VIEW          } from '../../modules/nf-core/samtools/view'
 
 include { RSEQC_READDISTRIBUTION } from '../../modules/nf-core/rseqc/readdistribution/main'
 include { NANOCOMP               } from '../../modules/nf-core/nanocomp/main'

diff --git a/workflows/scnanoseq.nf b/workflows/scnanoseq.nf
@@ -16,9 +16,6 @@ else {
     }
 }
 
-//if (params.quantification_type.equals('both') || params.quantification_type.equals('transcript') && !params.transcript_fasta
-
-
 /*
 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     CONFIG FILES
-Original file line number
+Diff line change
@@ Expand Up / @@ -16,9 +16,6 @@ else { @@
         }
     }
-    //if (params.quantification_type.equals('both') || params.quantification_type.equals('transcript') && !params.transcript_fasta
     /*
     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
         CONFIG FILES
@@ Expand Down @@