Fix zero falsy bug

nf-core · Nov 13, 2024 · c9712c8 · c9712c8
1 parent 3d1ebd8
commit c9712c8
Showing 1 changed file with 5 additions and 5 deletions.
diff --git a/modules/local/scanpy/filter/main.nf b/modules/local/scanpy/filter/main.nf
@@ -18,11 +18,11 @@ process SCANPY_FILTER {
     task.ext.when == null || task.ext.when
 
     script:
-    min_genes           = meta.min_genes ?: 1
-    min_cells           = meta.min_cells ?: 1
-    min_counts_gene     = meta.min_counts_gene ?: 1
-    min_counts_cell     = meta.min_counts_cell ?: 1
-    max_mito_percentage = meta.max_mito_percentage ?: 100
+    min_genes           = meta.containsKey("min_genes") ? meta.min_genes : 1
+    min_cells           = meta.containsKey("min_cells") ? meta.min_cells : 1
+    min_counts_gene     = meta.containsKey("min_counts_gene") ? meta.min_counts_gene : 1
+    min_counts_cell     = meta.containsKey("min_counts_cell") ? meta.min_counts_cell : 1
+    max_mito_percentage = meta.containsKey("max_mito_percentage") ? meta.max_mito_percentage : 100
     prefix = task.ext.prefix ?: "${meta.id}"
     template 'filter.py'
 }