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Replace DRAGMAP with NARFMAP #1358

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Replace DRAGMAP with NARFMAP #1358

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edmundmiller
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  • build: DRAGMAP => NARFMAP
  • refactor: DRAGMAP => NARFMAP
  • test: DRAGMAP => NARFMAP

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github-actions bot commented Dec 18, 2023 •
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nf-core lint overall result: Passed ✅ ⚠️

Posted for pipeline commit ea61766

+| ✅ 199 tests passed       |+
#| ❔  12 tests were ignored |#
!| ❗   4 tests had warnings |!

❗ Test warnings:

  • nextflow_config - Config manifest.version should end in dev: 3.4.3
  • pipeline_todos - TODO string in main.nf: Optionally add in-text citation tools to this list.
  • pipeline_todos - TODO string in main.nf: Optionally add bibliographic entries to this list.
  • pipeline_todos - TODO string in main.nf: Only uncomment below if logic in toolCitationText/toolBibliographyText has been filled!

❔ Tests ignored:

  • files_exist - File is ignored: .github/workflows/awsfulltest.yml
  • files_exist - File is ignored: .github/workflows/awstest.yml
  • files_exist - File is ignored: conf/modules.config
  • files_unchanged - File ignored due to lint config: .github/PULL_REQUEST_TEMPLATE.md
  • files_unchanged - File ignored due to lint config: assets/nf-core-sarek_logo_light.png
  • files_unchanged - File ignored due to lint config: docs/images/nf-core-sarek_logo_light.png
  • files_unchanged - File ignored due to lint config: docs/images/nf-core-sarek_logo_dark.png
  • files_unchanged - File ignored due to lint config: .gitignore or .prettierignore
  • actions_ci - actions_ci
  • actions_awstest - 'awstest.yml' workflow not found: /home/runner/work/sarek/sarek/.github/workflows/awstest.yml
  • template_strings - template_strings
  • modules_config - modules_config

✅ Tests passed:

Run details

  • nf-core/tools version 2.14.1
  • Run at 2024-07-25 00:54:48

@edmundmiller edmundmiller self-assigned this Dec 18, 2023
nvnieuwk
nvnieuwk reviewed Dec 19, 2023
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LGTM, but I'm not a Sarek expert 😁

@maxulysse
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Looking good

@edmundmiller
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I think this needs #1359

@maxulysse
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I think this needs #1359

I think #1359 needs reviewing

@edmundmiller edmundmiller mentioned this pull request Jan 25, 2024
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maxulysse
maxulysse reviewed Jul 9, 2024
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<3

@edmundmiller edmundmiller mentioned this pull request Jul 11, 2024
Merged
@edmundmiller
dummy: Bump image manually
90438ab 
Bumped samtools to try force Seqera Containers to update
@FPGro FPGro mentioned this pull request Aug 21, 2024
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@FriederikeHanssen FriederikeHanssen Awaiting requested review from FriederikeHanssen FriederikeHanssen will be requested when the pull request is marked ready for review FriederikeHanssen is a code owner

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@edmundmiller @maxulysse @nvnieuwk