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Update modules#1180

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asp8200 merged 21 commits intodevnf-core/sarek:devfrom update_modulesnf-core/sarek:update_modulesCopy head branch name to clipboardAug 17, 2023

+230-115

Commits

Commits on Aug 15, 2023

• Update modules

  asp8200

  committed
  2f30bdf

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• Add required input channels for bcftools_stats

  asp8200

  committed
  0dce1c0

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• Trying to fix call to SENTIEON_BWAMEM

  asp8200

  committed
  2e02a1c

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• Trying to fix call to SENTIEON_BWAMEM

  asp8200

  committed
  3c69795

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• Trying to input-channels for BCFTOOLS_STATS right

  asp8200

  committed
  95e9cbb

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• Fix input-channels for SENTIEON_DEDUP

  asp8200

  committed
  f288686

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• Trying to fix input-channels for SNPEFF_SNPEFF

  asp8200

  committed
  409adb8

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• Trying to handle Missing process or function map related to VCF_ANNOTATE_SNPEFF

  asp8200

  committed
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Commits on Aug 16, 2023

• Trying to get call to SNPEFF to work

  asp8200

  committed
  7cdea7c

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• Still trying to get call to SNPEFF working

  asp8200

  committed
  78fd7ae

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• Fixing definition of snpeff_cache when downloading snpeff-cache

  asp8200

  committed
  26c4da9

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• Trying to revert controlfreec/makegraph to previous version. (Handling of ploidy in controlfreec will be part of upcoming release.)

  asp8200

  committed
  19e5bea

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• Trying to revert controlfreec/makegraph to previous version. (2)

  asp8200

  committed
  922e019

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• Updating md5sums since cnvkit was updated. [skip ci] [skip actions]

  asp8200

  committed
  ce62d00

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• Replacing MSISENSORPRO_MSI_SOMATIC with SISENSORPRO_MSISOMATIC

  asp8200

  committed
  944330b

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• Replacing MSISENSORPRO_MSI_SOMATIC with SISENSORPRO_MSISOMATIC. (2)

  asp8200

  committed
  a07f1a8

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• Updating changelog

  asp8200

  committed
  a124548

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Commits on Aug 17, 2023

• Update modules.json

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  asp8200

  and

  FriederikeHanssen

  authored
  be28b63

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• Update CHANGELOG.md

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  asp8200

  and

  FriederikeHanssen

  authored
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• Update CHANGELOG.md

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  asp8200

  and

  FriederikeHanssen

  authored
  766b61e

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• [automated] Fix linting with Prettier

  nf-core-bot

  committed
  3b4e8bd

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