Merge pull request #1256 from maxulysse/controlfreec

FIX: remove spaces in controlfreec modules
nf-core · Sep 26, 2023 · f1dfdac · f1dfdac
2 parents 96140de + f3314b8
commit f1dfdac
Show file tree

Hide file tree

Showing 8 changed files with 21 additions and 19 deletions.
diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -16,6 +16,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 ### Fixed
 
 - [#1247](https://github.com/nf-core/sarek/pull/1247) - FIX: Result paths for full size test to be correctly displayed on the website
+- [#1256](https://github.com/nf-core/sarek/pull/1256) - Fix issue with controlfreec container declaration
 
 ### Dependencies
 

diff --git a/modules.json b/modules.json
@@ -77,27 +77,27 @@
                     },
                     "controlfreec/assesssignificance": {
                         "branch": "master",
-                        "git_sha": "053564d29a20d45323547973c4023914923823df",
+                        "git_sha": "3fbcafe2543dabcc7b2be0f3b24507002b3e4b0d",
                         "installed_by": ["modules"]
                     },
                     "controlfreec/freec": {
                         "branch": "master",
-                        "git_sha": "053564d29a20d45323547973c4023914923823df",
+                        "git_sha": "3fbcafe2543dabcc7b2be0f3b24507002b3e4b0d",
                         "installed_by": ["modules"]
                     },
                     "controlfreec/freec2bed": {
                         "branch": "master",
-                        "git_sha": "053564d29a20d45323547973c4023914923823df",
+                        "git_sha": "3fbcafe2543dabcc7b2be0f3b24507002b3e4b0d",
                         "installed_by": ["modules"]
                     },
                     "controlfreec/freec2circos": {
                         "branch": "master",
-                        "git_sha": "053564d29a20d45323547973c4023914923823df",
+                        "git_sha": "3fbcafe2543dabcc7b2be0f3b24507002b3e4b0d",
                         "installed_by": ["modules"]
                     },
                     "controlfreec/makegraph": {
                         "branch": "master",
-                        "git_sha": "053564d29a20d45323547973c4023914923823df",
+                        "git_sha": "3fbcafe2543dabcc7b2be0f3b24507002b3e4b0d",
                         "installed_by": ["modules"],
                         "patch": "modules/nf-core/controlfreec/makegraph/controlfreec-makegraph.diff"
                     },

diff --git a/modules/nf-core/controlfreec/assesssignificance/main.nf b/modules/nf-core/controlfreec/assesssignificance/main.nf
diff --git a/modules/nf-core/controlfreec/freec/main.nf b/modules/nf-core/controlfreec/freec/main.nf
diff --git a/modules/nf-core/controlfreec/freec2bed/main.nf b/modules/nf-core/controlfreec/freec2bed/main.nf
diff --git a/modules/nf-core/controlfreec/freec2circos/main.nf b/modules/nf-core/controlfreec/freec2circos/main.nf
diff --git a/modules/nf-core/controlfreec/makegraph/controlfreec-makegraph.diff b/modules/nf-core/controlfreec/makegraph/controlfreec-makegraph.diff
diff --git a/modules/nf-core/controlfreec/makegraph/main.nf b/modules/nf-core/controlfreec/makegraph/main.nf