Merge pull request #1118 from maxulysse/last_alternate_registry

FIX: Remove public_aws_ecr profile
nf-core · Jun 20, 2023 · deca5f3 · deca5f3
2 parents 58f9d99 + db59f49
commit deca5f3
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Showing 6 changed files with 5 additions and 79 deletions.
diff --git a/.github/workflows/awsfulltest.yml b/.github/workflows/awsfulltest.yml
@@ -26,7 +26,7 @@ jobs:
               "hook_url": "${{ secrets.MEGATESTS_ALERTS_SLACK_HOOK_URL }}",
               "outdir": "s3://${{ secrets.AWS_S3_BUCKET }}/sarek/results-${{ github.sha }}/somatic_test"
             }
-          profiles: test_full,public_aws_ecr
+          profiles: test_full
       - uses: actions/upload-artifact@v3
         with:
           name: Tower debug log file

diff --git a/.github/workflows/awsfulltest_germline.yml b/.github/workflows/awsfulltest_germline.yml
@@ -26,7 +26,7 @@ jobs:
               "hook_url": "${{ secrets.MEGATESTS_ALERTS_SLACK_HOOK_URL }}",
               "outdir": "s3://${{ secrets.AWS_S3_BUCKET }}/sarek/results-${{ github.sha }}/germline_test"
             }
-          profiles: test_full_germline,public_aws_ecr
+          profiles: test_full_germline
       - uses: actions/upload-artifact@v3
         with:
           name: Tower debug log file

diff --git a/.github/workflows/awstest.yml b/.github/workflows/awstest.yml
@@ -22,7 +22,7 @@ jobs:
             {
               "outdir": "s3://${{ secrets.AWS_S3_BUCKET }}/sarek/results-test-${{ github.sha }}"
             }
-          profiles: test,public_aws_ecr
+          profiles: test
       - uses: actions/upload-artifact@v3
         with:
           name: Tower debug log file

diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -15,6 +15,8 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ### Fixed
 
+- [#1118](https://github.com/nf-core/sarek/pull/1118) - Remove `public_aws_ecr` profile
+
 ## [3.2.2](https://github.com/nf-core/sarek/releases/tag/3.2.2) - Vuoinesluobbalah
 
 Vuoinesluobbalah is a lake close to Bierikjávrre.

diff --git a/conf/public_aws_ecr.config b/conf/public_aws_ecr.config
diff --git a/nextflow.config b/nextflow.config
@@ -234,9 +234,6 @@ profiles {
         executor.memory        = 60.GB
         executor.name          = 'local'
     }
-    public_aws_ecr {
-        includeConfig 'conf/public_aws_ecr.config'
-    }
     // Basic test profile for CI
     test                       { includeConfig 'conf/test.config' }
     test_cache                 { includeConfig 'conf/test/cache.config' }