Merge pull request #229 from MaxUlysse/Control-FREEC

Fix Control freec restart issue
nf-core · Jul 13, 2020 · 8c4e8d3 · 8c4e8d3
2 parents 2e39582 + 569e8c3
commit 8c4e8d3
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -12,6 +12,8 @@ The format is based on [Keep a Changelog](http://keepachangelog.com/en/1.0.0/) a
 
 ### Fixed
 
+- [#229](https://github.com/nf-core/sarek/pull/229) - Fix `Control-FREEC` restart issue [#225](https://github.com/nf-core/sarek/issues/225)
+
 ### Deprecated
 
 ### Removed

diff --git a/main.nf b/main.nf
@@ -392,7 +392,7 @@ if (!checkParameterExistence(step, stepList)) exit 1, "Unknown step ${step}, see
 
 toolList = defineToolList()
 tools = params.tools ? params.tools.split(',').collect{it.trim().toLowerCase().replaceAll('-', '').replaceAll('_', '')} : []
-if (step == 'controlfreec') tools = 'controlfreec'
+if (step == 'controlfreec') tools = ['controlfreec']
 if (!checkParameterList(tools, toolList)) exit 1, 'Unknown tool(s), see --help for more information'
 
 skipQClist = defineSkipQClist()