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remove .view() statement
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adamrtalbot committed Dec 21, 2023
1 parent 162397d commit 6b42de6
Showing 1 changed file with 0 additions and 2 deletions.
2 changes: 0 additions & 2 deletions workflows/sarek.nf
Original file line number Diff line number Diff line change
Expand Up @@ -494,8 +494,6 @@ workflow SAREK {
}
.set { reads_grouping_key }

reads_grouping_key.view()

// reads will be sorted
sort_bam = true
FASTQ_ALIGN_BWAMEM_MEM2_DRAGMAP_SENTIEON(reads_for_alignment, index_alignement, sort_bam, fasta, fasta_fai)
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