Make -a the default for bcftools concat.

nf-core · Feb 22, 2024 · 3910021 · 3910021
1 parent 6aeac92
commit 3910021
Showing 1 changed file with 1 addition and 0 deletions.
diff --git a/conf/modules/post_variant_calling.config b/conf/modules/post_variant_calling.config
@@ -17,6 +17,7 @@
 process {
 
     withName: 'GERMLINE_VCFS_CONCAT'{
+        ext.args   = { -a }
         ext.when   = { params.concatenate_vcfs }
         publishDir = [
             //specify to avoid publishing, overwritten otherwise