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nf-core/rnaseq version 1.2
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@ewels ewels released this 12 Dec 16:44
· 4733 commits to master since this release
1.2
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Pipeline updates

  • Removed some outdated documentation about non-existent features
  • Config refactoring and code cleaning
  • Added a --fcExtraAttributes option to specify more than ENSEMBL gene names in featureCounts
  • Remove legacy rseqc strandRule config code. #119
  • Added STRINGTIE ballgown output to results folder #125
  • HiSAT index build now requests 200GB memory, enough to use the exons / splice junction option for building.
    • Added documentation about the --hisatBuildMemory option.
  • BAM indices are stored and re-used between processes #71

Bug Fixes

  • Fixed conda bug which caused problems with environment resolution due to changes in bioconda #113
  • Fixed wrong gffread command line #117
  • Added cpus = 1 to workflow summary process #130
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