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Fix #975 and replace System.exit(1) calls in template #978

Merged
merged 3 commits into from
Mar 28, 2023
Merged

Fix #975 and replace System.exit(1) calls in template #978

merged 3 commits into from
Mar 28, 2023

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drpatelh
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@drpatelh drpatelh commented Mar 27, 2023 •
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@drpatelh drpatelh changed the title Fix #975 and replace System.exit(1) calls in pipeline template Fix #975 and replace System.exit(1) calls in template Mar 27, 2023
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github-actions bot commented Mar 27, 2023 •
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nf-core lint overall result: Passed ✅ ⚠️

Posted for pipeline commit 7fd78ca

+| ✅ 151 tests passed       |+
#| ❔   4 tests were ignored |#
!| ❗   3 tests had warnings |!

❗ Test warnings:

  • nextflow_config - Config manifest.version should end in dev: '3.11.0'
  • readme - README did not have a Nextflow minimum version mentioned in Quick Start section.
  • pipeline_todos - TODO string in methods_description_template.yml: #Update the HTML below to your prefered methods description, e.g. add publication citation for this pipeline

❔ Tests ignored:

  • files_unchanged - File ignored due to lint config: assets/email_template.html
  • files_unchanged - File ignored due to lint config: assets/email_template.txt
  • files_unchanged - File ignored due to lint config: lib/NfcoreSchema.groovy
  • files_unchanged - File ignored due to lint config: lib/NfcoreTemplate.groovy

✅ Tests passed:

Run details

  • nf-core/tools version 2.7.2
  • Run at 2023-03-27 15:50:50

@drpatelh drpatelh mentioned this pull request Mar 28, 2023
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@maxulysse maxulysse mentioned this pull request Mar 28, 2023
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@drpatelh drpatelh merged commit 8e68c07 into nf-core:dev Mar 28, 2023
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@maxulysse maxulysse maxulysse approved these changes

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@drpatelh @maxulysse