Merge pull request #1380 from nf-core/fix_tximport_summarizedexperiment

Fix issues with R modules changing sample names
nf-core · Sep 13, 2024 · ffb223e · ffb223e
2 parents 085ecfe + 765e67d
commit ffb223e
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -6,6 +6,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 ## v3.16.0dev - [date]
 
 - [PR #1374](https://github.com/nf-core/rnaseq/pull/1374) - Bump pipeline version to 3.16.0dev
+- [PR #1380](https://github.com/nf-core/rnaseq/pull/1380) - Fix issues with R modules changing sample names
 
 ### Credits
 

diff --git a/modules.json b/modules.json
@@ -227,7 +227,7 @@
                     },
                     "summarizedexperiment/summarizedexperiment": {
                         "branch": "master",
-                        "git_sha": "4e5f4687318f24ba944a13609d3ea6ebd890737d",
+                        "git_sha": "625fbbc0531fb1717349c7f1b1c677a3b8619767",
                         "installed_by": ["modules", "quantify_pseudo_alignment"]
                     },
                     "trimgalore": {
@@ -237,7 +237,7 @@
                     },
                     "tximeta/tximport": {
                         "branch": "master",
-                        "git_sha": "d612c281cf2fae62cdd79c70a22fc6349108570c",
+                        "git_sha": "625fbbc0531fb1717349c7f1b1c677a3b8619767",
                         "installed_by": ["modules", "quantify_pseudo_alignment"]
                     },
                     "ucsc/bedclip": {

diff --git a/modules/nf-core/summarizedexperiment/summarizedexperiment/environment.yml b/modules/nf-core/summarizedexperiment/summarizedexperiment/environment.yml
diff --git a/modules/nf-core/summarizedexperiment/summarizedexperiment/templates/summarizedexperiment.r b/modules/nf-core/summarizedexperiment/summarizedexperiment/templates/summarizedexperiment.r
diff --git a/modules/nf-core/tximeta/tximport/environment.yml b/modules/nf-core/tximeta/tximport/environment.yml
diff --git a/modules/nf-core/tximeta/tximport/templates/tximport.r b/modules/nf-core/tximeta/tximport/templates/tximport.r