Modify FastQC output publishing to comply with the paths in MultiQC c…

…onfig.
nf-core · Jun 3, 2024 · 4d6caa7 · 4d6caa7
1 parent 21095f3
commit 4d6caa7
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Showing 3 changed files with 13 additions and 2 deletions.
diff --git a/subworkflows/nf-core/fastq_fastqc_umitools_fastp/nextflow.config b/subworkflows/nf-core/fastq_fastqc_umitools_fastp/nextflow.config
diff --git a/subworkflows/nf-core/fastq_fastqc_umitools_trimgalore/nextflow.config b/subworkflows/nf-core/fastq_fastqc_umitools_trimgalore/nextflow.config
diff --git a/workflows/rnaseq/assets/multiqc/multiqc_config.yml b/workflows/rnaseq/assets/multiqc/multiqc_config.yml
@@ -21,6 +21,7 @@ run_modules:
   - star
   - hisat2
   - rsem
+  - umi-tools
   - salmon
   - kallisto
   - samtools