Releases · nf-core/references

What's Changed

Add RNA-seq references by @edmundmiller in #14
WIP: Discussion about input parameters by @ewels in #5
Initial Sarek by @edmundmiller in #17
MERGE TEMPLATE by @maxulysse in #19
comment mags_size by @maxulysse in #20
TEMPLATE sync by @maxulysse in #21
add tests for sarek by @maxulysse in #22
Merge all script into one AND add tools selection by @maxulysse in #23
Add tests for rnaseq by @maxulysse in #24
add faidx, gffread and sizes by @maxulysse in #27
Add hisat2 by @maxulysse in #28
Add extract splice_sites by @maxulysse in #29
Hisat2 one more time by @maxulysse in #30
Add RSEM + refactor tests by @maxulysse in #31
Add kallisto, salmon by @maxulysse in #32
Handle pre-existing fai and sizes + move default test asset file by @maxulysse in #33
small refactor + adding intervals by @maxulysse in #34
Publish output by @maxulysse in #35
Fix Intervals generation by @maxulysse in #36
add tabix + small test refactor + rename bed_intervals to intervals_bed by @maxulysse in #37
fix gtf generation and dependencies by @maxulysse in #39
Trying publishing to a more complete path by @maxulysse in #41
add tests for multiple references building at once by @maxulysse in #42
Multiple again by @maxulysse in #43
Create assets for existing fasta in igenomes by @maxulysse in #47
Fix GHA - Minimal Java is 17 by @maxulysse in #50
Better publishing of all files by @maxulysse in #49
simplify TABIX generation + refactor by @maxulysse in #48
Update assets by @maxulysse in #51
Add most entried in assets by @maxulysse in #52
Better publishing for all aligner indexes by @maxulysse in #53
Final publish extended by @maxulysse in #54
Add decompress subworkflows + source_gff -> reference_version by @maxulysse in #55
Publish WBcel235 by @maxulysse in #56
Just 2 shards by @maxulysse in #60
Simplify map by @maxulysse in #59
Move assets in its own repo by @maxulysse in #61
Code-polish + refactor + add comments by @maxulysse in #62
Unpack gff even when gtf is present by @maxulysse in #63
Better docs by @maxulysse in #64
Minor code polish before soft release of v0.1 by @maxulysse in #68
Generate index out of all the generated references by @maxulysse in #66
Better comments pre-release 0.1 by @maxulysse in #69
prepare RC 0.1 by @maxulysse in #70