Merge pull request #44 from a4000/dev

added pattern to ncbidownload_group to allow a comma separated list of groups
nf-core · Apr 15, 2024 · 1c93f1f · 1c93f1f
2 parents 07e7671 + 288be93
commit 1c93f1f
Showing 1 changed file with 1 addition and 13 deletions.
diff --git a/nextflow_schema.json b/nextflow_schema.json
@@ -372,19 +372,7 @@
                     "type": "string",
                     "default": "all",
                     "description": "The NCBI taxonomic groups to download. Options include 'all', 'archaea', 'bacteria', 'fungi', 'invertebrate', 'metagenomes', 'plant', 'protozoa', 'vertebrate_mammalian', 'vertebrate_other', and 'viral'. A comma-separated list is also valid (e.g., 'bacteria,viral').",
-                    "enum": [
-                        "all",
-                        "archaea",
-                        "bacteria",
-                        "fungi",
-                        "invertebrate",
-                        "metagenomes",
-                        "plant",
-                        "protozoa",
-                        "vertebrate_mammalian",
-                        "vertebrate_other",
-                        "viral"
-                    ]
+                    "pattern": "^((all|archaea|bacteria|fungi|invertebrate|metagenomes|plant|protozoa|vertebrate_mammalian|vertebrate_other|viral)?,?)*(?<!,)$"
                 },
                 "ncbidownload_section": {
                     "type": "string",