Update CI so each test is run only once and as its own test #97
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edmundmiller
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Feb 26, 2024
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I like it! I haven't read through all of the logic in the script.
I think the best course of action would be to include this in nf-core/actions. That'll make sure the logic gets updated, and it's well encapsulated, and people aren't changing the python file and not contributing back up stream.
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Linking this for a relevant issue askimed/nf-test#199 |
adamrtalbot
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Feb 26, 2024
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adamrtalbot
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Mar 11, 2024
Changes: - Workflow now parses repo for changed files with Python - Runs relevant tests by listing their nf-test files as the matrix of values - Uses tags to check for dependencies only Related to: nf-core/phageannotator#97 nf-core/fetchngs#300
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PR checklist
nf-core lint).nextflow run . -profile test,docker --outdir <OUTDIR>).nextflow run . -profile debug,test,docker --outdir <OUTDIR>).docs/usage.mdis updated.docs/output.mdis updated.CHANGELOG.mdis updated.README.mdis updated (including new tool citations and authors/contributors).