Code

Main nf whitespace#28

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Merged

ypriverol merged 15 commits intonf-core:devnf-core/pgdb:devfrom ewels:main-nf-whitespaceewels/nf-core-pgdb:main-nf-whitespaceCopy head branch name to clipboardApr 15, 2021

+515-484

Commits

Commits on Apr 14, 2021

• Tabs to spaces

  ewels

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  41ed3ac

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• Sort out indentation in main.nf

  ewels

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  1442057

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• Remove double-header, move summary to top of main.nf

  ewels

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  ccb1053

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• Remove unused ZCAT, clone into cwd

  ewels

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  80a2ea7

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• Strip {} from lots of variables

  ewels

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  8a2bc98

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• nextflow.config whitespace, config_profile_name

  ewels

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  d6b5e02

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• Don't limit resources for test_full, drop single_end

  ewels

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  48e4078

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• baseDir -> projectDir

  ewels

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  d9e93ab

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• Added missing config_profile_name to schema

  ewels

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  015f767

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• Move params.cbioportal_study_id initialisation into nextflow.config

  ewels

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  8c0893b

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• Space after // comment

  ewels

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  e843382

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• Drop duplicate .Rprofile creation from Dockerfile

  ewels

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  6d08b56

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• --taxonomy not used anywhere, replaced in schema and nextflow.config for --ensembl_name

  ewels

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  37b2fd6

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• Finish stripping custom_runName

  ewels

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  bb32a88

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• Use the pipeline summary from the schema

  ewels

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  04e34f0

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