Code

Wake me up when september ends#84

Code

Merged

subwaystation merged 24 commits intodevnf-core/pangenome:devfrom wake_me_up_when_september_endsnf-core/pangenome:wake_me_up_when_september_endsCopy head branch name to clipboardSep 12, 2022

+308-123

Commits

Commits on Sep 7, 2022

• define required parameters

  subwaystation

  committed
  8d0e15e

  Copy full SHA for 8d0e15e

• we actually want to call it n_mappings

  subwaystation

  committed
  4df1464

  Copy full SHA for 4df1464

• add wfmash_block_length_cmd

  subwaystation

  committed
  42dd229

  Copy full SHA for 42dd229

• wfmash_mash_kmer_cmd

  subwaystation

  committed
  2b8933b

  Copy full SHA for 2b8933b

• wfmash_mash_kmer_thres_cmd

  subwaystation

  committed
  7028e27

  Copy full SHA for 7028e27

• wfmash_sparse_map

  subwaystation

  committed
  ab257cf

  Copy full SHA for ab257cf

• smoothxg_block_id_min

  subwaystation

  committed
  99c5405

  Copy full SHA for 99c5405

• smoothxg_poa_params_cmd

  subwaystation

  committed
  c8a0153

  Copy full SHA for c8a0153

• seqwish sparse factor, but not activated

  subwaystation

  committed
  8d50d00

  Copy full SHA for 8d50d00

Commits on Sep 8, 2022

• smoothxg_temp_dir

  subwaystation

  committed
  000b343

  Copy full SHA for 000b343

• smoothxg_xpoa_stuff

  subwaystation

  committed
  d86eb17

  Copy full SHA for d86eb17

• deactivate consensus graph

  subwaystation

  committed
  71c767a

  Copy full SHA for 71c767a

• update to the most recent PGGB Dockerfile

  subwaystation

  committed
  2faea2b

  Copy full SHA for 2faea2b

• seqwish_sparse_factor

  subwaystation

  committed
  1a4e6c8

  Copy full SHA for 1a4e6c8

• update default values in nextflow.config

  subwaystation

  committed
  f99cefa

  Copy full SHA for f99cefa

• added vcfwave step in vg_deconstruct

  subwaystation

  committed
  ec46421

  Copy full SHA for ec46421

• check for input indices and create them on the fly if required

  subwaystation

  committed
  a5379b9

  Copy full SHA for a5379b9

Commits on Sep 9, 2022

• help message correction

  subwaystation

  committed
  5d14f7d

  Copy full SHA for 5d14f7d

Commits on Sep 12, 2022

• if you happy and you know it clap your hands!

  subwaystation

  committed
  45eb867

  Copy full SHA for 45eb867

• make the CI happy

  subwaystation

  committed
  2e022b5

  Copy full SHA for 2e022b5

• bring schema up to date

  subwaystation

  committed
  d49b11f

  Copy full SHA for d49b11f

• bring schema up to date

  subwaystation

  committed
  9173fc5

  Copy full SHA for 9173fc5

• update help message

  subwaystation

  committed
  a2247ba

  Copy full SHA for a2247ba

• another bug fix

  subwaystation

  committed
  44e5943

  Copy full SHA for 44e5943