reflect vcf_spec changes also in the schema

CHANGELOG.md

@@ -9,6 +9,7 @@ This release fixes some important bugs:
 - Per default, we set the number of mappings in `wfmash` to `1`. Previously, this was set to the given number of haplotypes.
 - To complement the issue above, there is a new parameter `wfmash_n_mappings` with default `1`.
 - `bcftools` in the `VG_DECONSTRUCT` module was updated to the most recent version `1.19` to prevent errors like `corrupted size vs. prev_size`.
+- Fixed some problems with the delimiter in `VG_DECONSTRUCT` so that the parameters given by `--vcf-spec` are now applied correctly.
 
 ## 1.1.0 - Schmuddlweddr
 

nextflow_schema.json

@@ -260,8 +260,8 @@
             "properties": {
                 "vcf_spec": {
                     "type": "string",
-                    "description": "Specify a set of VCFs to produce with --vcf_spec \"REF:DELIM[:LEN][,REF:DELIM:[LEN]]*\".",
-                    "help_text": "The paths matching ^REF are used as a reference, while the sample haplotypes are derived from path names, e.g. when DELIM=# and with '-V chm13:#', a path named HG002#1#ctg would be assigned to sample HG002 phase 1. If LEN is specified and greater than 0, the VCFs are decomposed, filtering sites whose max allele length is greater than LEN."
+                    "description": "Specify a set of VCFs to produce with --vcf_spec \"REF[:LEN][,REF[:LEN]]*\".",
+                    "help_text": "The paths matching ^REF are used as a reference, while the sample haplotypes are derived from path names, e.g. when DELIM=# and with '-V chm13', a path named HG002#1#ctg would be assigned to sample HG002 phase 1. If LEN is specified and greater than 0, the VCFs are decomposed, filtering sites whose max allele length is greater than LEN."
                 }
             }
         },