Attempt to fix lint errors

nf-core · Jan 8, 2025 · a67f17e · a67f17e
1 parent 973bbe9
commit a67f17e
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Showing 3 changed files with 3 additions and 19 deletions.
diff --git a/.nf-core.yml b/.nf-core.yml
@@ -1,7 +1,4 @@
 lint:
-  files_exist:
-    - assets/schema_input.json
-    - conf/igenomes.config
   files_unchanged:
     - assets/nf-core-pangenome_logo_light.png
 nf_core_version: 3.1.1
@@ -19,3 +16,6 @@ template:
   org: nf-core
   outdir: .
   version: 1.2.0dev
+  skip_features:
+    - fastqc
+    - igenomes
diff --git a/conf/modules.config b/conf/modules.config
@@ -91,14 +91,6 @@ process {
         saveAs: { filename -> filename.equals('versions.yml') ? null : filename }
     ]
 
-    withName: CUSTOM_DUMPSOFTWAREVERSIONS {
-        publishDir = [
-            path: { "${params.outdir}/pipeline_info" },
-            mode: params.publish_dir_mode,
-            pattern: '*_versions.yml'
-        ]
-    }
-
     withName: WFMASH_MAP_ALIGN {
         ext.args = {
             [

diff --git a/nextflow_schema.json b/nextflow_schema.json
@@ -414,14 +414,6 @@
                     "default": "https://raw.githubusercontent.com/nf-core/test-datasets/",
                     "hidden": true
                 },
-                "validationLenientMode": {
-                    "type": "boolean",
-                    "fa_icon": "far fa-check-circle",
-                    "description": "Validation of parameters in lenient more.",
-                    "hidden": true,
-                    "help_text": "Allows string values that are parseable as numbers or booleans. For further information see [JSONSchema docs](https://github.com/everit-org/json-schema#lenient-mode).",
-                    "default": true
-                },
                 "show_hidden_params": {
                     "type": "boolean",
                     "fa_icon": "far fa-check-circle",