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nf-core · Nov 12, 2024 · 5bfb41b · 5bfb41b
1 parent fd72c71
commit 5bfb41b
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Showing 4 changed files with 4 additions and 5 deletions.
diff --git a/subworkflows/local/bam_sv_variant_calling/main.nf b/subworkflows/local/bam_sv_variant_calling/main.nf
@@ -23,5 +23,4 @@ workflow BAM_SV_VARIANT_CALLING {
 
     emit:
     vcf_ch
-
 }
diff --git a/subworkflows/local/repeat_characterization/main.nf b/subworkflows/local/repeat_characterization/main.nf
@@ -41,4 +41,4 @@ workflow  REPEAT_CHARACTERIZATION{
                 fasta_fai,
                 bed,
                 id)
-}
+}
diff --git a/subworkflows/local/set_value_channel.nf b/subworkflows/local/set_value_channel.nf
@@ -27,4 +27,4 @@ workflow SET_VALUE_CHANNEL {
 
     emit:
     data // channel: [ file(infile) ]
-}
+}
diff --git a/workflows/pacvar.nf b/workflows/pacvar.nf
@@ -121,7 +121,7 @@ workflow PACVAR {
             }
         }
 
-         if (!params.skip_sv) {
+        if (!params.skip_sv) {
             //pbsv structural variant calling
             BAM_SV_VARIANT_CALLING(ordered_bam_ch,
                                     ordered_bai_ch,
@@ -135,7 +135,7 @@ workflow PACVAR {
                         bam_bai_ch,
                         fasta)
             }
-         }
+        }
     }
 
     if (params.workflow == 'repeat') {
Original file line number	Diff line number	Diff line change
Expand Up		@@ -23,5 +23,4 @@ workflow BAM_SV_VARIANT_CALLING {

		emit:
		vcf_ch

		}
-Original file line number
+Diff line change
@@ Expand Up / @@ -41,4 +41,4 @@ workflow REPEAT_CHARACTERIZATION{ @@
                     fasta_fai,
                     bed,
                     id)
-    }
+    }