Update subworkflows/local/repeat_characterization/main.nf

Co-authored-by: Felix Lenner <52530259+fellen31@users.noreply.github.com>
nf-core · Nov 28, 2024 · 3201ea7 · 3201ea7
1 parent 05512eb
commit 3201ea7
Showing 1 changed file with 0 additions and 1 deletion.
diff --git a/subworkflows/local/repeat_characterization/main.nf b/subworkflows/local/repeat_characterization/main.nf
@@ -43,7 +43,6 @@ workflow  REPEAT_CHARACTERIZATION{
     //Index the VCF file
     BCFTOOLS_INDEX(BCFTOOLS_SORT.out.vcf)
 
-
     bam_bai_ch = SAMTOOLS_SORT.out.bam.join(SAMTOOLS_INDEX.out.bai).view()
     bam_bai_vcf_tbi_ch =  SAMTOOLS_SORT.out.bam.join(SAMTOOLS_INDEX.out.bai).join(BCFTOOLS_SORT.out.vcf).join(BCFTOOLS_INDEX.out.csi)
     bam_bai_vcf_tbi_repeat_ch = bam_bai_vcf_tbi_ch.join(repeat_id)