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Use BAM_RSEQC subworkflow #587

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Use BAM_RSEQC subworkflow

Use BAM_RSEQC subworkflow #587

Triggered via pull request August 4, 2024 12:56
@edmundmilleredmundmiller
opened #155
bam_rseqc
Status Success
Total duration 1m 41s
Artifacts 1

linting.yml

on: pull_request
pre-commit
16s
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nf-core
1m 33s
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12 errors
HISAT2.Should run with defaults: HISAT2#L1
Assertion failed: 1 of 3 assertions failed
HISAT2.Should run with defaults: HISAT2#L1
Assertion failed: 2 of 3 assertions failed
bwamem2.Should run with defaults: workflows/tests/aligner/bwamem2.nf.test#L1
Assertion failed: 1 of 3 assertions failed
bwamem2.Should run with defaults: workflows/tests/aligner/bwamem2.nf.test#L1
Assertion failed: 1 of 3 assertions failed
DRAGMAP.Should run with defaults: DRAGMAP#L1
Assertion failed: 1 of 3 assertions failed
DRAGMAP.Should run with defaults: DRAGMAP#L1
Assertion failed: 1 of 3 assertions failed
Bowtie2.Should run with defaults: Bowtie2#L1
Assertion failed: 1 of 3 assertions failed
Bowtie2.Should run with defaults: Bowtie2#L1
Assertion failed: 1 of 3 assertions failed
BWA.Should run with defaults: BWA#L1
Assertion failed: 1 of 3 assertions failed
BWA.Should run with defaults: BWA#L1
Assertion failed: 1 of 3 assertions failed
STAR.Should run with defaults: STAR#L1
Assertion failed: 1 of 3 assertions failed
STAR.Should run with defaults: STAR#L1
Assertion failed: 1 of 3 assertions failed

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