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Update Docker container tcoffee (was wrong before) #7487

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merged 2 commits into from
Feb 15, 2025
+5 −1
Merged

Update Docker container tcoffee (was wrong before) #7487

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6f1e327
update docker
luisas Feb 14, 2025
2b3c657
update docker
luisas Feb 14, 2025
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6 changes: 5 additions & 1 deletion modules/nf-core/tcoffee/align/main.nf
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Original file line number Diff line number Diff line change
Expand Up @@ -5,7 +5,7 @@ process TCOFFEE_ALIGN {
conda "${moduleDir}/environment.yml"
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'oras://community.wave.seqera.io/library/t-coffee_tmalign_pigz:f861f2f8f266c2fe':
'community.wave.seqera.io/library/t-coffee_tmalign_pigz:4d0971cdf12a9460' }"
'community.wave.seqera.io/library/t-coffee_tmalign_pigz:be7dac2ae6aba380' }"

input:
tuple val(meta) , path(fasta)
Expand All @@ -31,6 +31,8 @@ process TCOFFEE_ALIGN {
def write_output = compress ? " | pigz -cp ${task.cpus} > ${prefix}.aln.gz" : ""
"""
export TEMP='./'
export TMP_4_TCOFFEE="./"
export HOME="./"
t_coffee -seq ${fasta} \
$tree_args \
$template_args \
Expand All @@ -51,6 +53,8 @@ process TCOFFEE_ALIGN {
"""
# Otherwise, tcoffee will crash when calling its version
export TEMP='./'
export TMP_4_TCOFFEE="./"
export HOME="./"
touch ${prefix}.aln${compress ? '.gz':''}

cat <<-END_VERSIONS > versions.yml
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