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module: snp-dists #697

Merged
merged 9 commits into from
Sep 15, 2021
Merged

module: snp-dists #697

merged 9 commits into from
Sep 15, 2021

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abhi18av
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@abhi18av abhi18av commented Sep 8, 2021 •
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PR checklist

Closes #XXX

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the module conventions in the contribution docs
  • If necessary, include test data in your PR.
  • Remove all TODO statements.
  • Emit the <SOFTWARE>.version.txt file.
  • Follow the naming conventions.
  • Follow the parameters requirements.
  • Follow the input/output options guidelines.
  • Add a resource label
  • Use BioConda and BioContainers if possible to fulfil software requirements.
  • Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
    • PROFILE=docker pytest --tag <MODULE> --symlink --keep-workflow-wd
    • PROFILE=singularity pytest --tag <MODULE> --symlink --keep-workflow-wd
    • PROFILE=conda pytest --tag <MODULE> --symlink --keep-workflow-wd

@abhi18av abhi18av linked an issue Sep 8, 2021 that may be closed by this pull request
new module: snp-dists #696
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@abhi18av abhi18av mentioned this pull request Sep 8, 2021
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@abhi18av abhi18av self-assigned this Sep 13, 2021
@abhi18av abhi18av requested a review from rpetit3 September 13, 2021 19:06
@abhi18av abhi18av marked this pull request as ready for review September 13, 2021 19:06
@abhi18av abhi18av added new module Adding a new module Ready for Review labels Sep 13, 2021
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rpetit3 commented Sep 13, 2021

@abhi18av I'm good with it, but think one of the core members should probably make the final decision

@abhi18av abhi18av requested a review from a team September 14, 2021 06:41
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Yeah, makes sense. I've request the modules-team to review the PR now 🙏

grst
grst reviewed Sep 15, 2021
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looks good, just found a leftover TODO statement

tests/modules/snpdists/test.yml Outdated
Comment on lines 1 to 2
## TODO nf-core: Please run the following command to build this file:
# nf-core modules create-test-yml snpdists
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leftover todo statement

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Whoops!

Fixed with ac28108

Thanks for the review @grst !

@grst grst mentioned this pull request Sep 15, 2021
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drpatelh
drpatelh reviewed Sep 15, 2021
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modules/snpdists/main.nf Outdated Show resolved Hide resolved
drpatelh
drpatelh approved these changes Sep 15, 2021
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LGTM too!

@drpatelh drpatelh merged commit 1bc3f6c into nf-core:master Sep 15, 2021
@abhi18av abhi18av deleted the abhinav/snp-dists branch September 15, 2021 15:57
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@drpatelh drpatelh drpatelh approved these changes

@grst grst grst approved these changes

@rpetit3 rpetit3 Awaiting requested review from rpetit3

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new module: snp-dists
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@abhi18av @rpetit3 @grst @drpatelh