Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Add share to find path #5899

Merged
merged 1 commit into from
Jul 1, 2024
Merged

Add share to find path #5899

Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
2 changes: 1 addition & 1 deletion modules/nf-core/interproscan/main.nf
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -31,7 +31,7 @@ process INTERPROSCAN {
if [ -d 'data' ]; then
# Find interproscan.properties to link data/ from work directory
INTERPROSCAN_DIR="\$( dirname "\$( dirname "\$( which interproscan.sh )" )" )"
INTERPROSCAN_PROPERTIES="\$( find "\$INTERPROSCAN_DIR" -name "interproscan.properties" )"
INTERPROSCAN_PROPERTIES="\$( find "\$INTERPROSCAN_DIR/share" -name "interproscan.properties" )"
cp "\$INTERPROSCAN_PROPERTIES" .
sed -i "/^bin\\.directory=/ s|.*|bin.directory=\$INTERPROSCAN_DIR/bin|" interproscan.properties
export INTERPROSCAN_CONF=interproscan.properties
Expand Down
Loading