Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

bcftools isec input can be bcf or bcf.gz as well as vcf.gz #5685

Merged
merged 11 commits into from
Jul 4, 2024
Merged

bcftools isec input can be bcf or bcf.gz as well as vcf.gz #5685

merged 11 commits into from
Jul 4, 2024

Commits on May 23, 2024

  1. bcftools isec input can be bcf or bcf.gz as well as vcf.gz

    @RuthEberhardt
    RuthEberhardt committed May 23, 2024
    Configuration menu
    Copy the full SHA
    d5967d6 View commit details
    Browse the repository at this point in the history

Commits on Jul 2, 2024

  1. Add stub and stub test

    @SPPearce
    SPPearce committed Jul 2, 2024
    Configuration menu
    Copy the full SHA
    29c3b48 View commit details
    Browse the repository at this point in the history

  2. Update tests

    @SPPearce
    SPPearce committed Jul 2, 2024
    Configuration menu
    Copy the full SHA
    b0b0471 View commit details
    Browse the repository at this point in the history

Commits on Jul 3, 2024

  1. Merge branch 'master' into 2024-05-23

    @SPPearce
    SPPearce authored Jul 3, 2024
    Configuration menu
    Copy the full SHA
    1133fc0 View commit details
    Browse the repository at this point in the history

  2. Merge branch 'master' into 2024-05-23

    @SPPearce
    SPPearce authored Jul 3, 2024
    Configuration menu
    Copy the full SHA
    c9f41ca View commit details
    Browse the repository at this point in the history

  3. Update meta.yml

    @tstoeriko
    tstoeriko committed Jul 3, 2024
    Configuration menu
    Copy the full SHA
    6985c77 View commit details
    Browse the repository at this point in the history

  4. Add stub to name of stub test

    @SPPearce
    SPPearce committed Jul 3, 2024
    Configuration menu
    Copy the full SHA
    e7d5222 View commit details
    Browse the repository at this point in the history

  5. Update meta

    @SPPearce
    SPPearce committed Jul 3, 2024
    Configuration menu
    Copy the full SHA
    f3f35ed View commit details
    Browse the repository at this point in the history

  6. Update tests 

    Changes:
- exclude .tbi files from snapshot due to failing conda tests
- update main.nf.test.snap
- specificy path type of the  output
    @tstoeriko
    tstoeriko committed Jul 3, 2024
    Configuration menu
    Copy the full SHA
    d15592c View commit details
    Browse the repository at this point in the history

  7. Merge branch 'master' into 2024-05-23

    @tstoeriko
    tstoeriko authored Jul 3, 2024
    Configuration menu
    Copy the full SHA
    382c3b8 View commit details
    Browse the repository at this point in the history

  8. Update tests again 

    Changes:
- include versions
- sort file name list for consistent order
- update snapshot
    @tstoeriko
    tstoeriko committed Jul 3, 2024
    Configuration menu
    Copy the full SHA
    74e97d0 View commit details
    Browse the repository at this point in the history