Add nf-test to unzip module

modules/nf-core/unzip/main.nf

@@ -20,7 +20,6 @@ process UNZIP {
     script:
     def args = task.ext.args ?: ''
     if ( archive instanceof List && archive.name.size > 1 ) { error "[UNZIP] error: 7za only accepts a single archive as input. Please check module input." }
-
     prefix = task.ext.prefix ?: ( meta.id ? "${meta.id}" : archive.baseName)
     """
     7za \\
@@ -34,4 +33,17 @@ process UNZIP {
         7za: \$(echo \$(7za --help) | sed 's/.*p7zip Version //; s/(.*//')
     END_VERSIONS
     """
+
+    stub:
+    def args = task.ext.args ?: ''
+    if ( archive instanceof List && archive.name.size > 1 ) { error "[UNZIP] error: 7za only accepts a single archive as input. Please check module input." }
+    prefix = task.ext.prefix ?: ( meta.id ? "${meta.id}" : archive.baseName)
+    """
+    mkdir "${prefix}"
+
+    cat <<-END_VERSIONS > versions.yml
+    "${task.process}":
+        7za: \$(echo \$(7za --help) | sed 's/.*p7zip Version //; s/(.*//')
+    END_VERSIONS
+    """
 }

modules/nf-core/unzip/tests/main.nf.test

@@ -0,0 +1,56 @@
+nextflow_process {
+
+    name "Test Process UNZIP"
+    script "../main.nf"
+    process "UNZIP"
+
+    tag "modules"
+    tag "modules_nfcore"
+    tag "unzip"
+
+    test("generic [tar] [tar_gz]") {
+
+        when {
+            process {
+                """
+                input[0] = [
+                            [ id: 'hello' ],
+                            file(params.test_data['generic']['tar']['tar_gz'], checkIfExists: true)
+                ]
+                """
+            }
+        }
+
+        then {
+               assertAll(
+                            { assert process.success },
+                            { assert path(process.out.unzipped_archive.get(0).get(1)).exists() },
+                            { assert snapshot(process.out.unzipped_archive).match("unzipped_archive") },
+                            { assert snapshot(process.out.versions).match("versions") }
+          )
+        }
+    }
+
+    test("generic [tar] [tar_gz] stub") {
+
+        options "-stub"
+
+        when {
+            process {
+                """
+                input[0] = [
+                            [ id: 'stub' ],
+                            file(params.test_data['generic']['tar']['tar_gz'], checkIfExists: true)
+                ]
+                """
+            }
+        }
+
+        then {
+            assertAll(
+                { assert process.success },
+                { assert snapshot(process.out).match("stub") }
+            )
+        }
+    }
+}

modules/nf-core/unzip/tests/tags.yml

@@ -0,0 +1,2 @@
+unzip:
+  - "modules/nf-core/unzip/**"

modules/nf-core/unzipfiles/main.nf

@@ -34,4 +34,16 @@ process UNZIPFILES {
         7za: \$(echo \$(7za --help) | sed 's/.*p7zip Version //; s/(.*//')
     END_VERSIONS
     """
+
+    stub:
+    prefix = task.ext.prefix ?: ( meta.id ? "${meta.id}" : archive.baseName)
+    """
+    mkdir "${prefix}"
+    touch "${prefix}/hello.txt"
+
+    cat <<-END_VERSIONS > versions.yml
+    "${task.process}":
+        7za: \$(echo \$(7za --help) | sed 's/.*p7zip Version //; s/(.*//')
+    END_VERSIONS
+    """
 }

modules/nf-core/unzipfiles/tests/main.nf.test

@@ -0,0 +1,57 @@
+nextflow_process {
+
+    name "Test Process UNZIPFILES"
+    script "../main.nf"
+    process "UNZIPFILES"
+
+    tag "modules"
+    tag "modules_nfcore"
+    tag "unzipfiles"
+
+    test("generic [tar] [tar_gz]") {
+
+        when {
+            process {
+                """
+                input[0] = [
+                            [ id: 'hello' ],
+                            file(params.test_data['generic']['tar']['tar_gz'], checkIfExists: true)
+                ]
+                """
+            }
+        }
+
+        then {
+               assertAll(
+                            { assert process.success },
+                            { assert path(process.out.files.get(0).get(1)).exists() },
+                            { assert snapshot(process.out.files).match("files") },
+                            { assert snapshot(process.out.versions).match("versions") }
+          )
+        }
+    }
+
+    test("generic [tar] [tar_gz] stub") {
+
+        options "-stub"
+
+        when {
+            process {
+                """
+                input[0] = [
+                            [ id: 'stub' ],
+                            file(params.test_data['generic']['tar']['tar_gz'], checkIfExists: true)
+                ]
+                """
+            }
+        }
+
+        then {
+            assertAll(
+                { assert process.success },
+                { assert snapshot(process.out).match("stub") }
+            )
+        }
+    }
+
+}

modules/nf-core/unzipfiles/tests/tags.yml

@@ -0,0 +1,2 @@
+unzipfiles:
+  - "modules/nf-core/unzipfiles/**"

tests/config/pytest_modules.yml

@@ -2171,12 +2171,6 @@ universc:
 untarfiles:
   - modules/nf-core/untarfiles/**
   - tests/modules/nf-core/untarfiles/**
-unzip:
-  - modules/nf-core/unzip/**
-  - tests/modules/nf-core/unzip/**
-unzipfiles:
-  - modules/nf-core/unzipfiles/**
-  - tests/modules/nf-core/unzipfiles/**
 upd:
   - modules/nf-core/upd/**
   - tests/modules/nf-core/upd/**