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Add meta to bowtie build #3848

Merged
merged 37 commits into from
Jun 27, 2024
Merged

Add meta to bowtie build #3848

merged 37 commits into from
Jun 27, 2024

Commits on Sep 20, 2023

  1. Add meta to bowtie build

    @SPPearce
    SPPearce committed Sep 20, 2023
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Commits on Sep 21, 2023

  1. Merge branch 'master' into bowtie_build_meta

    @SPPearce
    SPPearce committed Sep 21, 2023
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  2. Swap fastq ngscheckmate tests

    @SPPearce
    SPPearce committed Sep 21, 2023
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Commits on Oct 17, 2023

  1. Merge branch 'master' into bowtie_build_meta

    @SPPearce
    SPPearce authored Oct 17, 2023
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Commits on Oct 19, 2023

  1. Merge branch 'master' into bowtie_build_meta

    @SPPearce
    SPPearce authored Oct 19, 2023
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Commits on May 3, 2024

  1. Merge branch 'master' into bowtie_build_meta

    @SPPearce
    SPPearce authored May 3, 2024
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  2. Swap to nf-test

    @SPPearce
    SPPearce committed May 3, 2024
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  3. Remove spurious changes to bowtie2

    @SPPearce
    SPPearce committed May 3, 2024
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  4. Actually revert bowtie2

    @SPPearce
    SPPearce committed May 3, 2024
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  5. Add the rest of bowtie2

    @SPPearce
    SPPearce committed May 3, 2024
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  6. Again

    @SPPearce
    SPPearce committed May 3, 2024
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Commits on May 8, 2024

  1. Merge branch 'master' into bowtie_build_meta

    @SPPearce
    SPPearce authored May 8, 2024
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Commits on May 13, 2024

  1. Merge branch 'master' into bowtie_build_meta

    @SPPearce
    SPPearce authored May 13, 2024
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Commits on May 22, 2024

  1. Merge branch 'master' into bowtie_build_meta

    @SPPearce
    SPPearce authored May 22, 2024
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Commits on Jun 17, 2024

  1. Fix merge conflict

    @SPPearce
    SPPearce committed Jun 17, 2024
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  2. Revert bowtie2 changes

    @SPPearce
    SPPearce committed Jun 17, 2024
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  3. Swap to meta.id as prefix

    @SPPearce
    SPPearce committed Jun 17, 2024
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Commits on Jun 18, 2024

  1. Swap bowtie align to nftest

    @SPPearce
    SPPearce committed Jun 18, 2024
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  2. Update tests

    @SPPearce
    SPPearce committed Jun 18, 2024
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  3. Merge branch 'master' into bowtie_build_meta

    @SPPearce
    SPPearce authored Jun 18, 2024
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  4. Use nft-bam

    @SPPearce
    SPPearce committed Jun 18, 2024
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  5. Update modules/nf-core/bowtie/build/tests/main.nf.test 

    Co-authored-by: Mahesh Binzer-Panchal <mahesh.binzer-panchal@nbis.se>
    @SPPearce @mahesh-panchal
    SPPearce and mahesh-panchal authored Jun 18, 2024
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  6. Swap to testdata path

    @SPPearce
    SPPearce committed Jun 18, 2024
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  7. Update modules/nf-core/ngscheckmate/patterngenerator/main.nf

    @SPPearce
    SPPearce authored Jun 18, 2024
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  8. Swap index finding to $

    @SPPearce
    SPPearce committed Jun 18, 2024
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  9. Merge branch 'master' into bowtie_build_meta

    @SPPearce
    SPPearce authored Jun 18, 2024
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Commits on Jun 19, 2024

  1. Merge branch 'master' into bowtie_build_meta

    @SPPearce
    SPPearce authored Jun 19, 2024
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Commits on Jun 25, 2024

  1. Fix vafncm test

    @SPPearce
    SPPearce committed Jun 25, 2024
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  2. Update meta

    @SPPearce
    SPPearce committed Jun 25, 2024
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  3. Merge branch 'master' into bowtie_build_meta

    @SPPearce
    SPPearce authored Jun 25, 2024
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  4. Remove bam header md5sum

    @SPPearce
    SPPearce committed Jun 25, 2024
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  5. Merge branch 'master' into bowtie_build_meta

    @SPPearce
    SPPearce authored Jun 25, 2024
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Commits on Jun 26, 2024

  1. Update fastq test

    @SPPearce
    SPPearce committed Jun 26, 2024
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  2. Merge branch 'master' into bowtie_build_meta

    @SPPearce
    SPPearce authored Jun 26, 2024
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  3. Update paired bam test

    @SPPearce
    SPPearce committed Jun 26, 2024
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Commits on Jun 27, 2024

  1. Delete modules/nf-core/bowtie/align/tests/nextflow.config

    @SPPearce
    SPPearce authored Jun 27, 2024
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  2. Merge branch 'master' into bowtie_build_meta

    @SPPearce
    SPPearce authored Jun 27, 2024
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