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Bump fgbio versions and swap to nftest #11900

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Bump fgbio versions and swap to nftest

Bump fgbio versions and swap to nftest #11900

Run time

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Job Run time
pre-commit
15s
editorconfig
10s
nf-test-changes
1m 6s
prettier
56s
pytest-changes
11s
pytest
0s
nf-core-lint-modules
0s
nf-core-lint-modules (fgbio/fastqtobam)
2m 0s
nf-core-lint-modules (fgbio/callduplexconsensusreads)
2m 7s
nf-core-lint-modules (fgbio/groupreadsbyumi)
2m 13s
nf-core-lint-modules (fgbio/zipperbams)
2m 6s
nf-core-lint-modules (fgbio/callmolecularconsensusreads)
2m 4s
nf-test (modules/nf-core/fgbio/fastqtobam, conda)
13m 23s
nf-core-lint-modules (fgbio/sortbam)
2m 1s
nf-test (modules/nf-core/fgbio/fastqtobam, docker_self_hosted)
7m 34s
nf-core-lint-modules (fgbio/filterconsensusreads)
2m 1s
nf-test (modules/nf-core/fgbio/fastqtobam, singularity)
8m 29s
nf-test (modules/nf-core/fgbio/callduplexconsensusreads, conda)
6m 41s
nf-test (modules/nf-core/fgbio/callduplexconsensusreads, docker_self_hosted)
5m 12s
nf-test (modules/nf-core/fgbio/callduplexconsensusreads, singularity)
6m 34s
nf-test (modules/nf-core/fgbio/groupreadsbyumi, conda)
6m 12s
nf-test (modules/nf-core/fgbio/groupreadsbyumi, docker_self_hosted)
5m 14s
nf-test (modules/nf-core/fgbio/groupreadsbyumi, singularity)
9m 30s
nf-test (modules/nf-core/fgbio/zipperbams, conda)
5m 53s
nf-test (modules/nf-core/fgbio/zipperbams, docker_self_hosted)
4m 55s
nf-test (modules/nf-core/fgbio/zipperbams, singularity)
7m 29s
nf-test (modules/nf-core/fgbio/callmolecularconsensusreads, conda)
8m 43s
nf-test (modules/nf-core/fgbio/callmolecularconsensusreads, docker_self_hosted)
5m 21s
nf-test (modules/nf-core/fgbio/callmolecularconsensusreads, singularity)
8m 26s
nf-test (modules/nf-core/fgbio/sortbam, conda)
5m 26s
nf-test (modules/nf-core/fgbio/sortbam, docker_self_hosted)
5m 33s
nf-test (modules/nf-core/fgbio/sortbam, singularity)
8m 52s
nf-test (modules/nf-core/fgbio/filterconsensusreads, conda)
6m 17s
nf-test (modules/nf-core/fgbio/filterconsensusreads, docker_self_hosted)
5m 20s
nf-test (modules/nf-core/fgbio/filterconsensusreads, singularity)
10m 46s
confirm-pass
1s
2h 49m 1s