adjust to new args in idfilter

nf-core · Feb 19, 2025 · ecb3b48 · ecb3b48
1 parent 1d83d7a
commit ecb3b48
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/conf/modules.config b/conf/modules.config
@@ -160,7 +160,7 @@ process {
             "-remove_decoys",
             "-precursor:length '${params.peptide_min_length}:${params.peptide_max_length}'",
             "-delete_unreferenced_peptide_hits",
-            (params.fdr_threshold == '0.01') ? "-score:pep 0.05" : "-score:pep " + params.fdr_threshold
+            (params.fdr_threshold == '0.01') ? "-score:peptide 0.05" : "-score:peptide " + params.fdr_threshold
         ].join(' ').trim()
         publishDir  = [
             path: {"${params.outdir}/intermediate_results/rescoring"},
@@ -190,7 +190,7 @@ process {
             "-remove_decoys",
             "-precursor:length '${params.peptide_min_length}:${params.peptide_max_length}'",
             "-delete_unreferenced_peptide_hits",
-            (params.fdr_threshold == '0.01') ? "-score:pep 0.05" : "-score:pep " + params.fdr_threshold
+            (params.fdr_threshold == '0.01') ? "-score:peptide 0.05" : "-score:peptide " + params.fdr_threshold
         ].join(' ').trim()
         publishDir  = [
             path: {"${params.outdir}/intermediate_results/rescoring"},